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PI0026994 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0026994
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:9700151..9700543
RNA-Seq ExpressionPI0026994
SyntenyPI0026994
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]8.7e-3966.15Show/hide
Query:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL
        +YSQ V MS D++ G RAG++S+ RN SSGSKRKRG +  E VEVI +A +F NDQLK I DWPKE RATEV+LR EVVKQL DIP+LRS+DR KL++IL
Subjt:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL

Query:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV
        F SV+  +GFLS+PT++KLEYC+ILLE NV
Subjt:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.4e-4169.29Show/hide
Query:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL
        MYSQ V MSPD+M G RAG++S+ +NCSSGSKRK+G +  ETVEVI++A++F NDQLKAIA+WPKE RATEV+LR EV+KQL DIPEL+SRDR KL++IL
Subjt:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL

Query:  FSSVDDTQGFLSVPTEMKLEYCSILLE
        F SV+  +GFLS+PTE KLEYC+ILL+
Subjt:  FSSVDDTQGFLSVPTEMKLEYCSILLE

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-3867.72Show/hide
Query:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL
        MYSQ V MS D+M GTRAG++S+ RNCSS SKRK+G Q  ETVEVIR+AM F NDQLKAIADW KE RA +V+LR  VVKQL DIP+L++RDR K+++IL
Subjt:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL

Query:  FSSVDDTQGFLSVPTEMKLEYCSILLE
        F SV+  +GFLS+PTE+KLEYC++LLE
Subjt:  FSSVDDTQGFLSVPTEMKLEYCSILLE

KAE8646815.1 hypothetical protein Csa_005367, partial [Cucumis sativus]1.2e-4068.99Show/hide
Query:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL
        MYSQ +DM PD+M+GTR  +SS+GRNCSSGSKRK GGQ  E V+VI N M+  NDQLKAIA+W KE RATEV+L VEVVKQL DI ELR+RDRVKL++I+
Subjt:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL

Query:  FSSVDDTQGFLSVPTEMKLEYCSILLEEN
        F  VDD +GFLS PT++KLEYC +LLE+N
Subjt:  FSSVDDTQGFLSVPTEMKLEYCSILLEEN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.2e-4167.69Show/hide
Query:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL
        MYSQ V MSPD+M G RAG++S+ RNCSS SKRKRG +R ETVEVIR+ M+F N+QLKAIADWPKE RA EV++R +VVKQL DIP+LRS+DR KL++IL
Subjt:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL

Query:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV
        F S++  +GFLS+PTE+KLEYC+ILL+  V
Subjt:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV

TrEMBL top hitse value%identityAlignment
A0A0A0KFW0 Uncharacterized protein2.0e-4169.23Show/hide
Query:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL
        MYSQ +DM PD+M+GTR  +SS+GRNCSSGSKRK GGQ  E V+VI N M+  NDQLKAIA+W KE RATEV+L VEVVKQL DI ELR+RDRVKL++I+
Subjt:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL

Query:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV
        F  VDD +GFLS PT++KLEYC +LLE+NV
Subjt:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV

A0A1S3B4L3 uncharacterized protein LOC1034859531.6e-4167.69Show/hide
Query:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL
        MYSQ V MSPD+M G RAG++S+ RNCSS SKRKRG +R ETVEVIR+ M+F N+QLKAIADWPKE RA EV++R +VVKQL DIP+LRS+DR KL++IL
Subjt:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL

Query:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV
        F S++  +GFLS+PTE+KLEYC+ILL+  V
Subjt:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV

A0A5A7SQU2 Putative nuclease HARBI17.0e-4269.29Show/hide
Query:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL
        MYSQ V MSPD+M G RAG++S+ +NCSSGSKRK+G +  ETVEVI++A++F NDQLKAIA+WPKE RATEV+LR EV+KQL DIPEL+SRDR KL++IL
Subjt:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL

Query:  FSSVDDTQGFLSVPTEMKLEYCSILLE
        F SV+  +GFLS+PTE KLEYC+ILL+
Subjt:  FSSVDDTQGFLSVPTEMKLEYCSILLE

A0A5A7U0H7 Retrotransposon protein1.6e-4167.69Show/hide
Query:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL
        MYSQ V MSPD+M G RAG++S+ RNCSS SKRKRG +R ETVEVIR+ M+F N+QLKAIADWPKE RA EV++R +VVKQL DIP+LRS+DR KL++IL
Subjt:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL

Query:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV
        F S++  +GFLS+PTE+KLEYC+ILL+  V
Subjt:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV

A0A5D3BZU3 Retrotransposon protein4.2e-3966.15Show/hide
Query:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL
        +YSQ V MS D++ G RAG++S+ RN SSGSKRKRG +  E VEVI +A +F NDQLK I DWPKE RATEV+LR EVVKQL DIP+LRS+DR KL++IL
Subjt:  MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRIL

Query:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV
        F SV+  +GFLS+PT++KLEYC+ILLE NV
Subjt:  FSSVDDTQGFLSVPTEMKLEYCSILLEENV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGCCAAGCGGTGGATATGTCCCCAGATGACATGGTAGGAACACGTGCAGGTCGATCAAGTGATGGGCGAAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGG
CCAACGTAATGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTGCAAATGATCAATTGAAGGCAATTGCGGATTGGCCAAAAGAGAATCGTGCAACGGAGGTCAAAT
TGCGTGTTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGGGATAGGGTAAAGCTTCTACGAATATTATTCAGTAGTGTTGATGACACACAGGGATTC
CTGTCGGTCCCAACGGAAATGAAATTGGAGTACTGCAGTATTTTGTTGGAAGAAAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATAGCCAAGCGGTGGATATGTCCCCAGATGACATGGTAGGAACACGTGCAGGTCGATCAAGTGATGGGCGAAACTGTTCAAGTGGGAGTAAGAGGAAACGGGGTGG
CCAACGTAATGAAACAGTGGAGGTGATCAGGAATGCAATGGACTTTGCAAATGATCAATTGAAGGCAATTGCGGATTGGCCAAAAGAGAATCGTGCAACGGAGGTCAAAT
TGCGTGTTGAAGTCGTGAAACAACTGGATGATATCCCTGAACTACGGAGCCGGGATAGGGTAAAGCTTCTACGAATATTATTCAGTAGTGTTGATGACACACAGGGATTC
CTGTCGGTCCCAACGGAAATGAAATTGGAGTACTGCAGTATTTTGTTGGAAGAAAATGTTTGA
Protein sequenceShow/hide protein sequence
MYSQAVDMSPDDMVGTRAGRSSDGRNCSSGSKRKRGGQRNETVEVIRNAMDFANDQLKAIADWPKENRATEVKLRVEVVKQLDDIPELRSRDRVKLLRILFSSVDDTQGF
LSVPTEMKLEYCSILLEENV