CuGenDBv2

Gene ID	PI0027007
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr07:13890386..13891540
RNA-Seq Expression	PI0027007
Synteny	PI0027007
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]

1.0e-50

55.61

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Query:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE
        MS+EE H S  EQVIEG VTRGRK+QHS TR SKSKGP               G+EDVQL VGRLS+NF+ELVQENAEIT+ +KE++ED+GR+F+ ELKE
Subjt:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE

Query:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR
        LASTVTTLK                                  +NA     H T  GT  IKVPK DVYNG RNATVV+NFLF L RYF ALGV +D AR
Subjt:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR

Query:  INNA--YLRDVAQLWWRRKYLER
        IN+A  +LRD AQLWWRRKY ++
Subjt:  INNA--YLRDVAQLWWRRKYLER

KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]

7.1e-52

56.5

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Query:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE
        MS+EE H S  EQVIEG VTRGRKKQHS TR SKSKGPT              G+EDVQL VGRLS+NF+ELVQENAEIT+ +KE++ED+GR+F++ELKE
Subjt:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE

Query:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR
        LASTVTTLK                                  +NA     H T  GT  IKVPK DVYNG RNATVV+NFLF L RYF ALGV +D AR
Subjt:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR

Query:  INNA--YLRDVAQLWWRRKYLER
        IN+A  +LRDVAQLWWR KY ++
Subjt:  INNA--YLRDVAQLWWRRKYLER

KAA0050866.1 uncharacterized protein E6C27_scaffold404G001380 [Cucumis melo var. makuwa]

6.6e-50

56.05

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Query:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE
        MS+EE H S  EQVIEG+ TRGRK+QHS TR SKSKGP               G+EDVQL  GRLSDNF+ELVQENAEIT+ +KE++ED+G++F++ELKE
Subjt:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE

Query:  LASTVTTLK----------------VNNALD--------KHA---------HDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR
        LASTVTTLK                +   LD        KHA         H T  GT  IKVPK DVYNG RNATVV+NFLF L RYF ALGV +D AR
Subjt:  LASTVTTLK----------------VNNALD--------KHA---------HDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR

Query:  INNA--YLRDVAQLWWRRKYLER
        IN+A  +LRD AQLWWRRKY ++
Subjt:  INNA--YLRDVAQLWWRRKYLER

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]

3.0e-50

55.16

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Query:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE
        MS+EE H S  EQVIEG VTRGRK+QHS TR SKSKGP               G+EDVQL VGRLS+NF+ELVQENAEIT+ +KE++ED+GR+F+ ELKE
Subjt:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE

Query:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR
        L STVTTLK                                  +NA     H T  GT  IKVPK DVYNG RNATVV+NFLF L RYF ALGV +D AR
Subjt:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR

Query:  INNA--YLRDVAQLWWRRKYLER
        IN+A  +LRD AQLWWRRKY ++
Subjt:  INNA--YLRDVAQLWWRRKYLER

TYK18079.1 uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa]

7.1e-52

56.5

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Query:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE
        MS+EE H S  EQVIEG VTRGRKKQHS TR SKSKGPT              G+EDVQL VGRLS+NF+ELVQENAEIT+ +KE++ED+GR+F++ELKE
Subjt:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE

Query:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR
        LASTVTTLK                                  +NA     H T  GT  IKVPK DVYNG RNATVV+NFLF L RYF ALGV +D AR
Subjt:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR

Query:  INNA--YLRDVAQLWWRRKYLER
        IN+A  +LRDVAQLWWR KY ++
Subjt:  INNA--YLRDVAQLWWRRKYLER

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TAA5 Uncharacterized protein

5.0e-51

55.61

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Query:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE
        MS+EE H S  EQVIEG VTRGRK+QHS TR SKSKGP               G+EDVQL VGRLS+NF+ELVQENAEIT+ +KE++ED+GR+F+ ELKE
Subjt:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE

Query:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR
        LASTVTTLK                                  +NA     H T  GT  IKVPK DVYNG RNATVV+NFLF L RYF ALGV +D AR
Subjt:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR

Query:  INNA--YLRDVAQLWWRRKYLER
        IN+A  +LRD AQLWWRRKY ++
Subjt:  INNA--YLRDVAQLWWRRKYLER

A0A5A7TFP3 Retrotrans_gag domain-containing protein

3.4e-52

56.5

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Query:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE
        MS+EE H S  EQVIEG VTRGRKKQHS TR SKSKGPT              G+EDVQL VGRLS+NF+ELVQENAEIT+ +KE++ED+GR+F++ELKE
Subjt:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE

Query:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR
        LASTVTTLK                                  +NA     H T  GT  IKVPK DVYNG RNATVV+NFLF L RYF ALGV +D AR
Subjt:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR

Query:  INNA--YLRDVAQLWWRRKYLER
        IN+A  +LRDVAQLWWR KY ++
Subjt:  INNA--YLRDVAQLWWRRKYLER

A0A5A7U9J4 Retrotrans_gag domain-containing protein

3.2e-50

56.05

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Query:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE
        MS+EE H S  EQVIEG+ TRGRK+QHS TR SKSKGP               G+EDVQL  GRLSDNF+ELVQENAEIT+ +KE++ED+G++F++ELKE
Subjt:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE

Query:  LASTVTTLK----------------VNNALD--------KHA---------HDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR
        LASTVTTLK                +   LD        KHA         H T  GT  IKVPK DVYNG RNATVV+NFLF L RYF ALGV +D AR
Subjt:  LASTVTTLK----------------VNNALD--------KHA---------HDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR

Query:  INNA--YLRDVAQLWWRRKYLER
        IN+A  +LRD AQLWWRRKY ++
Subjt:  INNA--YLRDVAQLWWRRKYLER

A0A5A7VEX8 Polyprotein

1.4e-50

55.16

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Query:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE
        MS+EE H S  EQVIEG VTRGRK+QHS TR SKSKGP               G+EDVQL VGRLS+NF+ELVQENAEIT+ +KE++ED+GR+F+ ELKE
Subjt:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE

Query:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR
        L STVTTLK                                  +NA     H T  GT  IKVPK DVYNG RNATVV+NFLF L RYF ALGV +D AR
Subjt:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR

Query:  INNA--YLRDVAQLWWRRKYLER
        IN+A  +LRD AQLWWRRKY ++
Subjt:  INNA--YLRDVAQLWWRRKYLER

A0A5D3D3V4 Retrotrans_gag domain-containing protein

3.4e-52

56.5

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Query:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE
        MS+EE H S  EQVIEG VTRGRKKQHS TR SKSKGPT              G+EDVQL VGRLS+NF+ELVQENAEIT+ +KE++ED+GR+F++ELKE
Subjt:  MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPT--------------GLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKE

Query:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR
        LASTVTTLK                                  +NA     H T  GT  IKVPK DVYNG RNATVV+NFLF L RYF ALGV +D AR
Subjt:  LASTVTTLKV---------------------------------NNALDKHAHDTAQGTYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGAR

Query:  INNA--YLRDVAQLWWRRKYLER
        IN+A  +LRDVAQLWWR KY ++
Subjt:  INNA--YLRDVAQLWWRRKYLER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCCAGCGAGGAAAGACATGTATCACTAGAGGAGCAGGTCATTGAAGGGTCTGTTACCCGAGGAAGGAAAAAACAACATTCTCTAACCCGATGCTCTAAGTCCAAGGG
ACCGACGGGCTTGGAGGATGTTCAGCTCACGGTTGGTAGGCTGAGTGACAACTTTGATGAGTTGGTCCAGGAGAATGCAGAGATCACGACGACTTCCAAGGAGCTTGTCG
AAGATCTTGGACGGTCATTCAGAAGAGAGCTAAAAGAGCTAGCATCAACTGTGACTACCCTAAAGGTAAACAATGCCCTCGACAAGCATGCTCATGACACTGCGCAAGGC
ACCTATGCCATCAAGGTGCCTAAATTTGATGTTTACAATGGGGCAAGAAATGCCACAGTCGTGGAGAACTTTCTCTTTAGCCTAAATCGCTATTTTGATGCCCTAGGTGT
GTTCAATGATGGAGCTCGAATAAACAATGCCTACCTAAGGGATGTTGCTCAATTGTGGTGGCGACGCAAGTACCTTGAACGAGAGTAG

mRNA sequence

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Protein sequence

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MSSEERHVSLEEQVIEGSVTRGRKKQHSLTRCSKSKGPTGLEDVQLTVGRLSDNFDELVQENAEITTTSKELVEDLGRSFRRELKELASTVTTLKVNNALDKHAHDTAQG
TYAIKVPKFDVYNGARNATVVENFLFSLNRYFDALGVFNDGARINNAYLRDVAQLWWRRKYLERE

PI0027007 (gene) of Melon (PI 482460) v1 genome