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PI0027009 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027009
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr01:17257996..17259554
RNA-Seq ExpressionPI0027009
SyntenyPI0027009
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041264.1 hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa]7.0e-3040.51Show/hide
Query:  PFNVEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIK
        P  V  FY A +N EE   E+  K V F  +AINALY L N+    G +  ++P  R    ALE I WPG  W+   T KYQL+P+ L TE SVWL FIK
Subjt:  PFNVEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIK

Query:  KKIFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVKVVSFLCAINAIPIPDGLCNQMALNRMITFHGHK
        K I PT HDSTI++E  MLLY      + N  ++    +++W++ P GA PF    + L +K    L     + + +G+C    L+R IT H +K
Subjt:  KKIFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVKVVSFLCAINAIPIPDGLCNQMALNRMITFHGHK

KAA0049609.1 transposase [Cucumis melo var. makuwa]3.6e-3444.83Show/hide
Query:  PSKGMKKIGHSGLEERPSGSETISKTPSINSLIKVEKGLFPFNVEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPND-AETPGQIYVDSPTRRMA
        P K   K G S  ++   GSE       +     V  G  PF  E +             +  + V F+TE IN LYDLPND    PGQ  +       A
Subjt:  PSKGMKKIGHSGLEERPSGSETISKTPSINSLIKVEKGLFPFNVEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPND-AETPGQIYVDSPTRRMA

Query:  HKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEAL
         K +++I WP A    T T + QL+PHQLT EA+VWLFFIKKKIFPTHHDSTI  E A++LYCI  KK  NLG ++  + LSWMR PK A PFP+T++ L
Subjt:  HKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEAL

Query:  CVK
        C+K
Subjt:  CVK

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-3650.3Show/hide
Query:  VEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTG-KYQLYPHQLTTEASVWLFFIKKK
        V KFY  K N  +  + I  +   F+ E IN LY+ PNDAE  GQ  V   T+ +A +AL+V+AWPG   EV     +YQLYPH LTT+A+VW+FF K K
Subjt:  VEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTG-KYQLYPHQLTTEASVWLFFIKKK

Query:  IFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVKVVSFL
        IFPT +DSTI+++  ++LYCIM KK +NL ++I  +IL+WM  PK AMPFPS +E LC+K +  L
Subjt:  IFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVKVVSFL

TYK15967.1 hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]4.7e-3454.55Show/hide
Query:  ISGKTVSFSTEAINALYDLPND-AETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFPTHHDSTINLESAML
        +  + V F+TE IN LYDLPND    PGQ  +       A K +++I WP A    T T + QL+PHQLT EA+VWLFFIKKKIFPTHHDSTI  E A++
Subjt:  ISGKTVSFSTEAINALYDLPND-AETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFPTHHDSTINLESAML

Query:  LYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVK
        LYCI  KK  NLG ++  + LSWMR PK A PFP+T++ LC+K
Subjt:  LYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVK

TYK22187.1 hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa]3.9e-2849.32Show/hide
Query:  FYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAET-PGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFP
        FYAAK ++ E  V +  K VSF+ E IN LY L ND ++ P Q  +  PT+  +   +++IAW GA W  T T   QLYPHQLTTEA+VWL FIKKKI P
Subjt:  FYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAET-PGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFP

Query:  THHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMP
          +DST+ +E  +LLYC M K+  NLG ++  + L  MR  KGA P
Subjt:  THHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMP

TrEMBL top hitse value%identityAlignment
A0A5A7U806 Transposase1.7e-3444.83Show/hide
Query:  PSKGMKKIGHSGLEERPSGSETISKTPSINSLIKVEKGLFPFNVEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPND-AETPGQIYVDSPTRRMA
        P K   K G S  ++   GSE       +     V  G  PF  E +             +  + V F+TE IN LYDLPND    PGQ  +       A
Subjt:  PSKGMKKIGHSGLEERPSGSETISKTPSINSLIKVEKGLFPFNVEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPND-AETPGQIYVDSPTRRMA

Query:  HKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEAL
         K +++I WP A    T T + QL+PHQLT EA+VWLFFIKKKIFPTHHDSTI  E A++LYCI  KK  NLG ++  + LSWMR PK A PFP+T++ L
Subjt:  HKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEAL

Query:  CVK
        C+K
Subjt:  CVK

A0A5A7V6M5 Gag/pol protein4.9e-3750.3Show/hide
Query:  VEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTG-KYQLYPHQLTTEASVWLFFIKKK
        V KFY  K N  +  + I  +   F+ E IN LY+ PNDAE  GQ  V   T+ +A +AL+V+AWPG   EV     +YQLYPH LTT+A+VW+FF K K
Subjt:  VEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTG-KYQLYPHQLTTEASVWLFFIKKK

Query:  IFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVKVVSFL
        IFPT +DSTI+++  ++LYCIM KK +NL ++I  +IL+WM  PK AMPFPS +E LC+K +  L
Subjt:  IFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVKVVSFL

A0A5D3CVL7 Uncharacterized protein2.3e-3454.55Show/hide
Query:  ISGKTVSFSTEAINALYDLPND-AETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFPTHHDSTINLESAML
        +  + V F+TE IN LYDLPND    PGQ  +       A K +++I WP A    T T + QL+PHQLT EA+VWLFFIKKKIFPTHHDSTI  E A++
Subjt:  ISGKTVSFSTEAINALYDLPND-AETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFPTHHDSTINLESAML

Query:  LYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVK
        LYCI  KK  NLG ++  + LSWMR PK A PFP+T++ LC+K
Subjt:  LYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVK

A0A5D3CW17 Uncharacterized protein3.4e-3040.51Show/hide
Query:  PFNVEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIK
        P  V  FY A +N EE   E+  K V F  +AINALY L N+    G +  ++P  R    ALE I WPG  W+   T KYQL+P+ L TE SVWL FIK
Subjt:  PFNVEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIK

Query:  KKIFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVKVVSFLCAINAIPIPDGLCNQMALNRMITFHGHK
        K I PT HDSTI++E  MLLY      + N  ++    +++W++ P GA PF    + L +K    L     + + +G+C    L+R IT H +K
Subjt:  KKIFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVKVVSFLCAINAIPIPDGLCNQMALNRMITFHGHK

A0A5D3DES7 Uncharacterized protein1.9e-2849.32Show/hide
Query:  FYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAET-PGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFP
        FYAAK ++ E  V +  K VSF+ E IN LY L ND ++ P Q  +  PT+  +   +++IAW GA W  T T   QLYPHQLTTEA+VWL FIKKKI P
Subjt:  FYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAET-PGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTTEASVWLFFIKKKIFP

Query:  THHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMP
          +DST+ +E  +LLYC M K+  NLG ++  + L  MR  KGA P
Subjt:  THHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGATCTTCAAGCAAACACCAAAACCAAATCAAAGTACGTTCTGATGGCCTTGAATCAGAACGCCCTACATCGCGAGGAAGTGGCGAACAAAGAACGCCACAGTA
CACCCACCTGAAGCATGGCAAAGGCAAGGTGCTACTTAATCCTCCGCCTGAAGCATCTGACCTTTTCATGGAGGTGGAGGTTGACAATTTGGACCAGGAGAGGACAAAGG
AAGCTCCTCGTAGGAAGAACGAGCGGGAGCGAATGAGACTTAAGGAAACTCGAAAGGCGAAGCGCACATTAGAAATACGCTCACCGCCTAACAAGGTCGCAGAGCTACAC
AAGAAGATATCTGACAAACTTGCACAAGTCTCGTTCGCCAAAACGAGGAAAACTATAGAGGTGGTTAAGACTGCCTTAAAAAGGAAGGAAGAAAATAAAAAGATGCTCGC
GGACCTAAGCGAGCAAGTGGTGGAGCTCCCCGCGAAGTTGAAAGCACTAGAGCCTGAAAGGAACCTCGAGGTGATCGCAGAAGAACTCGAGGATGAGCTGGAGGCAATGA
GCCCACTTGATGAAGGGTCATCGCCAAGAAAACCAAGGGAGGTCGCCGGACCATCTAAAGGAATGAAGAAAATTGGGCATTCTGGACTTGAAGAGCGCCCATCAGGCAGC
GAAACCATTAGCAAAACACCCTCAATCAACTCCCTCATCAAGGTTGAGAAAGGGTTGTTTCCTTTTAATGTGGAGAAATTTTATGCGGCTAAACTCAATGCTGAAGAGTT
TAGCGTGGAGATCAGTGGAAAAACAGTGAGCTTCAGCACGGAGGCCATCAACGCGTTATATGATTTGCCCAATGATGCTGAAACGCCTGGACAGATATACGTAGATAGCC
CTACGAGAAGGATGGCCCATAAAGCGTTGGAGGTCATCGCATGGCCTGGGGCCACATGGGAAGTGACACAAACAGGGAAGTATCAGCTGTATCCACATCAGCTAACCACA
GAGGCGAGCGTGTGGCTGTTTTTCATCAAGAAGAAGATCTTCCCAACGCACCATGATAGCACCATTAACTTAGAGTCAGCGATGCTACTCTATTGTATAATGACGAAGAA
GCGTGTCAACCTTGGCGATCTAATAGCCACATCCATTTTGTCTTGGATGCGAGCTCCCAAAGGCGCCATGCCCTTCCCTTCCACCATTGAAGCCCTTTGCGTTAAGGTTG
TGTCGTTCCTTTGCGCCATCAATGCAATTCCAATCCCAGACGGGCTGTGCAACCAAATGGCTTTGAACCGCATGATCACTTTCCATGGACACAAGGAAATGGAAAGGCGA
GCAAAGACTTTGGGTGACACACCTGAAGGCATGGCTCAAGCAGAACGCAAGAGGAAGTCCCCAGCCGCCGCATCAACTCCCCCACCTAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGATCTTCAAGCAAACACCAAAACCAAATCAAAGTACGTTCTGATGGCCTTGAATCAGAACGCCCTACATCGCGAGGAAGTGGCGAACAAAGAACGCCACAGTA
CACCCACCTGAAGCATGGCAAAGGCAAGGTGCTACTTAATCCTCCGCCTGAAGCATCTGACCTTTTCATGGAGGTGGAGGTTGACAATTTGGACCAGGAGAGGACAAAGG
AAGCTCCTCGTAGGAAGAACGAGCGGGAGCGAATGAGACTTAAGGAAACTCGAAAGGCGAAGCGCACATTAGAAATACGCTCACCGCCTAACAAGGTCGCAGAGCTACAC
AAGAAGATATCTGACAAACTTGCACAAGTCTCGTTCGCCAAAACGAGGAAAACTATAGAGGTGGTTAAGACTGCCTTAAAAAGGAAGGAAGAAAATAAAAAGATGCTCGC
GGACCTAAGCGAGCAAGTGGTGGAGCTCCCCGCGAAGTTGAAAGCACTAGAGCCTGAAAGGAACCTCGAGGTGATCGCAGAAGAACTCGAGGATGAGCTGGAGGCAATGA
GCCCACTTGATGAAGGGTCATCGCCAAGAAAACCAAGGGAGGTCGCCGGACCATCTAAAGGAATGAAGAAAATTGGGCATTCTGGACTTGAAGAGCGCCCATCAGGCAGC
GAAACCATTAGCAAAACACCCTCAATCAACTCCCTCATCAAGGTTGAGAAAGGGTTGTTTCCTTTTAATGTGGAGAAATTTTATGCGGCTAAACTCAATGCTGAAGAGTT
TAGCGTGGAGATCAGTGGAAAAACAGTGAGCTTCAGCACGGAGGCCATCAACGCGTTATATGATTTGCCCAATGATGCTGAAACGCCTGGACAGATATACGTAGATAGCC
CTACGAGAAGGATGGCCCATAAAGCGTTGGAGGTCATCGCATGGCCTGGGGCCACATGGGAAGTGACACAAACAGGGAAGTATCAGCTGTATCCACATCAGCTAACCACA
GAGGCGAGCGTGTGGCTGTTTTTCATCAAGAAGAAGATCTTCCCAACGCACCATGATAGCACCATTAACTTAGAGTCAGCGATGCTACTCTATTGTATAATGACGAAGAA
GCGTGTCAACCTTGGCGATCTAATAGCCACATCCATTTTGTCTTGGATGCGAGCTCCCAAAGGCGCCATGCCCTTCCCTTCCACCATTGAAGCCCTTTGCGTTAAGGTTG
TGTCGTTCCTTTGCGCCATCAATGCAATTCCAATCCCAGACGGGCTGTGCAACCAAATGGCTTTGAACCGCATGATCACTTTCCATGGACACAAGGAAATGGAAAGGCGA
GCAAAGACTTTGGGTGACACACCTGAAGGCATGGCTCAAGCAGAACGCAAGAGGAAGTCCCCAGCCGCCGCATCAACTCCCCCACCTAAGTAA
Protein sequenceShow/hide protein sequence
MAGSSSKHQNQIKVRSDGLESERPTSRGSGEQRTPQYTHLKHGKGKVLLNPPPEASDLFMEVEVDNLDQERTKEAPRRKNERERMRLKETRKAKRTLEIRSPPNKVAELH
KKISDKLAQVSFAKTRKTIEVVKTALKRKEENKKMLADLSEQVVELPAKLKALEPERNLEVIAEELEDELEAMSPLDEGSSPRKPREVAGPSKGMKKIGHSGLEERPSGS
ETISKTPSINSLIKVEKGLFPFNVEKFYAAKLNAEEFSVEISGKTVSFSTEAINALYDLPNDAETPGQIYVDSPTRRMAHKALEVIAWPGATWEVTQTGKYQLYPHQLTT
EASVWLFFIKKKIFPTHHDSTINLESAMLLYCIMTKKRVNLGDLIATSILSWMRAPKGAMPFPSTIEALCVKVVSFLCAINAIPIPDGLCNQMALNRMITFHGHKEMERR
AKTLGDTPEGMAQAERKRKSPAAASTPPPK