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PI0027044 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027044
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr03:20766307..20766561
RNA-Seq ExpressionPI0027044
SyntenyPI0027044
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]1.3e-2776.19Show/hide
Query:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP
        MCDASD V+G MLGQK DKVI+PIY  SKTL   QENYTT EKELLAVVFAIEK+ SYI+GSKVT+HSDH  IR+LM KKDA+P
Subjt:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP

KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]3.1e-2981.93Show/hide
Query:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAK
        MCDASD VVG M GQKKDKV  PIYYA KTL   +ENYTTIEKELLA+VFAIEKFRSYI+GSKVT+HSDHS IR+LMAKKDAK
Subjt:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAK

TYK26567.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]3.1e-2981.93Show/hide
Query:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAK
        MCDASD VVG M GQKKDKV  PIYYA KTL   +ENYTTIEKELLA+VFAIEKFRSYI+GSKVT+HSDHS IR+LMAKKDAK
Subjt:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAK

WP_217833163.1 Ty3/Gypsy family RNase HI domain-containing protein, partial [Synechococcus sp. PCC 7002]5.9e-2871.43Show/hide
Query:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP
        MCDAS+ VVG +LGQ+K+K++HPIYYASKTL + QENYTT EKE+LA+VFA++KFR+Y IGSKVT++SDHS I++LM KKDAKP
Subjt:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP

XP_022152366.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 [Momordica charantia]1.4e-2670.24Show/hide
Query:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP
        MCDASD  +G MLGQ+K+K++HP+YYASKTLT  Q NYTT EKELLAVVFA +KFRSY+IG+KV V +DHS +++L AKKDAKP
Subjt:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP

TrEMBL top hitse value%identityAlignment
A0A5A7V586 Retrovirus-related Pol polyprotein from transposon 17.61.5e-2981.93Show/hide
Query:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAK
        MCDASD VVG M GQKKDKV  PIYYA KTL   +ENYTTIEKELLA+VFAIEKFRSYI+GSKVT+HSDHS IR+LMAKKDAK
Subjt:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAK

A0A5A7V8R9 RT_RNaseH domain-containing protein6.3e-2876.19Show/hide
Query:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP
        MCDASD V+G MLGQK DKVI+PIY  SKTL   QENYTT EKELLAVVFAIEK+ SYI+GSKVT+HSDH  IR+LM KKDA+P
Subjt:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP

A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.61.5e-2981.93Show/hide
Query:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAK
        MCDASD VVG M GQKKDKV  PIYYA KTL   +ENYTTIEKELLA+VFAIEKFRSYI+GSKVT+HSDHS IR+LMAKKDAK
Subjt:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAK

A0A5N6MV81 Integrase catalytic domain-containing protein1.6e-2672.62Show/hide
Query:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP
        MCDASD  VG +LGQ++DK  HPIYYASKTL + QENYTT EKELLAVVFA +KFRSY++ SK TV +DHS +RFL AKKDAKP
Subjt:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP

A0A6J1DHH9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110201107.0e-2770.24Show/hide
Query:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP
        MCDASD  +G MLGQ+K+K++HP+YYASKTLT  Q NYTT EKELLAVVFA +KFRSY+IG+KV V +DHS +++L AKKDAKP
Subjt:  MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.0e-1144.3Show/hide
Query:  DASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKD
        DASD  +G +L Q      HP+ Y S+TL   + NY+TIEKELLA+V+A + FR Y++G    + SDH  + +L   KD
Subjt:  DASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKD

P10394 Retrovirus-related Pol polyprotein from transposon 4121.3e-0638.16Show/hide
Query:  DASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMA
        DAS    G +L Q  +    P+ YAS+  T  + N +T E+EL A+ +AI  FR YI G   TV +DH  + +L +
Subjt:  DASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMA

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.0e-0635Show/hide
Query:  DASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSK-VTVHSDHSTIRFLMAKKD
        DAS + +G +L Q+      PI   S+TL   ++NY T E+ELLA+V+A+ K ++++ GS+ + + +DH  + F +A ++
Subjt:  DASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSK-VTVHSDHSTIRFLMAKKD

P20825 Retrovirus-related Pol polyprotein from transposon 2977.5e-1041.77Show/hide
Query:  DASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKD
        DAS+  +G +L Q      HPI + S+TL + + NY+ IEKELLA+V+A + FR Y++G +  + SDH  +R+L   K+
Subjt:  DASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKD

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.7e-0935Show/hide
Query:  DASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGS-KVTVHSDHSTIRFLMAKKD
        DAS+  +G +L Q       PI Y S++L   +ENY TIEKE+LA++++++  R+Y+ G+  + V++DH  + F +  ++
Subjt:  DASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGS-KVTVHSDHSTIRFLMAKKD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGATGCGAGTGATGCAGTGGTAGGGGTTATGCTGGGTCAAAAGAAAGACAAAGTGATCCACCCAATATACTACGCGAGCAAGACTCTCACCAATGTTCAAGAAAA
CTATACCACTATAGAGAAGGAATTGCTCGCAGTAGTTTTTGCAATTGAAAAGTTTAGGAGTTACATCATTGGCTCCAAAGTTACGGTACACTCTGATCATTCTACGATCA
GATTCCTTATGGCAAAGAAAGATGCTAAACCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGATGCGAGTGATGCAGTGGTAGGGGTTATGCTGGGTCAAAAGAAAGACAAAGTGATCCACCCAATATACTACGCGAGCAAGACTCTCACCAATGTTCAAGAAAA
CTATACCACTATAGAGAAGGAATTGCTCGCAGTAGTTTTTGCAATTGAAAAGTTTAGGAGTTACATCATTGGCTCCAAAGTTACGGTACACTCTGATCATTCTACGATCA
GATTCCTTATGGCAAAGAAAGATGCTAAACCGTAG
Protein sequenceShow/hide protein sequence
MCDASDAVVGVMLGQKKDKVIHPIYYASKTLTNVQENYTTIEKELLAVVFAIEKFRSYIIGSKVTVHSDHSTIRFLMAKKDAKP