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PI0027050 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027050
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-(apurinic or apyrimidinic site) endonuclease
Genome locationchr04:22425134..22426270
RNA-Seq ExpressionPI0027050
SyntenyPI0027050
Gene Ontology termsGO:0016311 - dephosphorylation (biological process)
GO:0033683 - nucleotide-excision repair, DNA incision (biological process)
GO:0042644 - chloroplast nucleoid (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0004528 - phosphodiesterase I activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
GO:0016791 - phosphatase activity (molecular function)
GO:0016829 - lyase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK25597.1 DNA-(apurinic or apyrimidinic site) lyase [Cucumis melo var. makuwa]2.6e-2083.33Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+PISVRYGLGIS+HDGEG+VVMVEFDSFFLLNVYVPNS DGLKRLSY+IT WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

XP_011652215.1 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X5 [Cucumis sativus]2.6e-2083.33Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+PISVRYGLGIS+HDGEG+VVMVEFDSFFLLNVYVPNS DGLKRLSY+IT WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

XP_016899623.1 PREDICTED: DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X3 [Cucumis melo]2.6e-2083.33Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+PISVRYGLGIS+HDGEG+VVMVEFDSFFLLNVYVPNS DGLKRLSY+IT WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

XP_031739365.1 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X1 [Cucumis sativus]2.6e-2083.33Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+PISVRYGLGIS+HDGEG+VVMVEFDSFFLLNVYVPNS DGLKRLSY+IT WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

XP_031739368.1 DNA-(apurinic or apyrimidinic site) lyase, chloroplastic isoform X4 [Cucumis sativus]2.6e-2083.33Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+PISVRYGLGIS+HDGEG+VVMVEFDSFFLLNVYVPNS DGLKRLSY+IT WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

TrEMBL top hitse value%identityAlignment
A0A0A0LF64 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-2083.33Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+PISVRYGLGIS+HDGEG+VVMVEFDSFFLLNVYVPNS DGLKRLSY+IT WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

A0A1S3B7C7 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-2083.33Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+PISVRYGLGIS+HDGEG+VVMVEFDSFFLLNVYVPNS DGLKRLSY+IT WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

A0A1S4DUI2 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-2083.33Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+PISVRYGLGIS+HDGEG+VVMVEFDSFFLLNVYVPNS DGLKRLSY+IT WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

A0A5A7UEY3 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-2083.33Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+PISVRYGLGIS+HDGEG+VVMVEFDSFFLLNVYVPNS DGLKRLSY+IT WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

A0A5D3DPL5 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-2083.33Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+PISVRYGLGIS+HDGEG+VVMVEFDSFFLLNVYVPNS DGLKRLSY+IT WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

SwissProt top hitse value%identityAlignment
A0MTA1 DNA-(apurinic or apyrimidinic site) endonuclease9.5e-1050.94Show/hide
Query:  QPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWD
        +P++V YG+G  +HD EG+V+  EF  FFL+  YVPN+  GL RL Y+ T WD
Subjt:  QPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWD

A1YES6 DNA-(apurinic or apyrimidinic site) endonuclease1.2e-0951.92Show/hide
Query:  PISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWD
        P+ V YG+G  +HD EG+V++ EFDSF L+  YVPN+  GL RL Y+   WD
Subjt:  PISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWD

P37454 Exodeoxyribonuclease6.6e-1145.61Show/hide
Query:  QPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYLL
        +P+ V YG+G+ +HD EG+V+ +EF++ F++ VY PNSR GL+R+ Y++  W+  LL
Subjt:  QPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYLL

P45951 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic7.3e-1865Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+P+SVRYG G+S HD EG++V  EFDSF+L+N YVPNS DGLKRLSY+I  WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

P51173 DNA-(apurinic or apyrimidinic site) endonuclease3.9e-1146.3Show/hide
Query:  QPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNS-RDGLKRLSYKITHWD
        +P ++ +G+GI+KHD EG+V+ +E+D F+++N Y+PN+   GL+RL Y+I  WD
Subjt:  QPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNS-RDGLKRLSYKITHWD

Arabidopsis top hitse value%identityAlignment
AT2G41460.1 apurinic endonuclease-redox protein5.2e-1965Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL
        I+ I+P+SVRYG G+S HD EG++V  EFDSF+L+N YVPNS DGLKRLSY+I  WD  L
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYL

AT2G41460.2 apurinic endonuclease-redox protein4.5e-1565.38Show/hide
Query:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYK
        I+ I+P+SVRYG G+S HD EG++V  EFDSF+L+N YVPNS DGLKRL  K
Subjt:  IATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYK

AT3G60950.1 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase8.8e-1152.38Show/hide
Query:  IQPISVRYGLGI--SKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSY----KITHWDSYL
        I+P+ VRYG G+  S HD EG++V  EFDSF+L++ YVPNS DGLK L       I  WD  L
Subjt:  IQPISVRYGLGI--SKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSY----KITHWDSYL

AT3G61030.1 Calcium-dependent lipid-binding (CaLB domain) family protein8.8e-1152.38Show/hide
Query:  IQPISVRYGLGI--SKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSY----KITHWDSYL
        I+P+ VRYG G+  S HD EG++V  EFDSF+L++ YVPNS DGLK L       I  WD  L
Subjt:  IQPISVRYGLGI--SKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSY----KITHWDSYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCTTTGGCAATTCCTTTATTATTCCCTTTTATAGCTACTATACAACCAATTTCAGTTAGATATGGTTTAGGCATATCAAAACATGATGGTGAAGGTCAGGTTGT
GATGGTGGAGTTCGATTCATTTTTTTTATTGAATGTTTATGTTCCTAATTCTAGAGACGGATTAAAGAGACTGTCATACAAGATTACCCATTGGGATTCCTATCTCTTAG
TTAAGTGTTTTGGGCAACGGGTTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATGCTTTGGCAATTCCTTTATTATTCCCTTTTATAGCTACTATACAACCAATTTCAGTTAGATATGGTTTAGGCATATCAAAACATGATGGTGAAGGTCAGGTTGT
GATGGTGGAGTTCGATTCATTTTTTTTATTGAATGTTTATGTTCCTAATTCTAGAGACGGATTAAAGAGACTGTCATACAAGATTACCCATTGGGATTCCTATCTCTTAG
TTAAGTGTTTTGGGCAACGGGTTCAATAA
Protein sequenceShow/hide protein sequence
MNALAIPLLFPFIATIQPISVRYGLGISKHDGEGQVVMVEFDSFFLLNVYVPNSRDGLKRLSYKITHWDSYLLVKCFGQRVQ