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PI0027057 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027057
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr09:9721098..9721897
RNA-Seq ExpressionPI0027057
SyntenyPI0027057
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035566.1 uncharacterized protein E6C27_scaffold285G002370 [Cucumis melo var. makuwa]4.7e-3343.04Show/hide
Query:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------
        AG++KT++ VGPFYP+LI E +VNLP +F+DPSS DYQ VH+ G  F I+P VIN F                                           
Subjt:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------

Query:  KYVILHKIGIANWFPSTHASSVSIALANLIYLIGIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDI---VHLMRPPHRVDPDLPVGVW
        KYVILHKI IANWFPS HASSVS+ L   +Y I     VD            A   D  P TLSLSYRLFQG+HVPDI   VH  R P   D       W
Subjt:  KYVILHKIGIANWFPSTHASSVSIALANLIYLIGIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDI---VHLMRPPHRVDPDLPVGVW

Query:  -MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE
            +G  +   L SRIL  L  ESRSLS  I  +SE
Subjt:  -MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE

KAA0066044.1 uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa]4.0e-3241.98Show/hide
Query:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------
        AG++KT++ VGPFYP+LI E +VNLP +F+DPSS +YQ VH+ G  F I+P VIN F                                           
Subjt:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------

Query:  KYVILHKIGIANWFPSTHASSVSIALANLIYLI--------GIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDIVHLMRPPHRVDPDL
        KYVILHKIGIANWFPS+HASSVS AL   +Y I        G+   ++    +TS          S P TL+LSYRLFQ SHVPDI H + P    +P L
Subjt:  KYVILHKIGIANWFPSTHASSVSIALANLIYLI--------GIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDIVHLMRPPHRVDPDL

Query:  -PVGVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE
             W    DG  +   L SRIL  L A+SRSLS  I  +SE
Subjt:  -PVGVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE

KAA0066488.1 uncharacterized protein E6C27_scaffold25G00260 [Cucumis melo var. makuwa]2.6e-3140.45Show/hide
Query:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------
        AG++KT++ VGPF+P+LI E +VNLPT+F+DPS  DYQ VH+ G  F+ITP VIN F                                           
Subjt:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------

Query:  KYVILHKIGIANWFPSTHASSVSIALANLIYLIGIKTLVDC--------YACSTSFCVK----------------------WARCADSAPKTLSLSYRLF
        KY ILHKIGIANWFPS+HASSVS AL N +Y I     VD              SF VK                       +   D  PKTLSLSYRLF
Subjt:  KYVILHKIGIANWFPSTHASSVSIALANLIYLIGIKTLVDC--------YACSTSFCVK----------------------WARCADSAPKTLSLSYRLF

Query:  QGSHVPDI---VHLMRPPHRVDPDLPVGVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE
        QG+HV DI   VH  R P   D       W    DG  +   L SRIL  L AESRSL   I  +SE
Subjt:  QGSHVPDI---VHLMRPPHRVDPDLPVGVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE

TYK08474.1 uncharacterized protein E5676_scaffold1071G00070 [Cucumis melo var. makuwa]2.4e-3252.9Show/hide
Query:  GMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------KYVILHKIGIANWFPSTHASSVSIA
        G++K ++ VGPFYP+LI E +VNLP+EF++PSSSDYQ VH+ GL FNI+P VIN F                   KYVILHKIGIANWF S+HAS+V +A
Subjt:  GMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------KYVILHKIGIANWFPSTHASSVSIA

Query:  LANLIYLIGIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDIVH
        L   +Y I     VD    + +          S PKTLSLSYRLFQGSHVPDI H
Subjt:  LANLIYLIGIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDIVH

TYK21447.1 uncharacterized protein E5676_scaffold609G001170 [Cucumis melo var. makuwa]2.6e-3142.92Show/hide
Query:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVIN----------------HFKYVILHKIGIANWFPSTHASSVSIALA
        AG++KT++ VGPFYP+L+ E +VN P  F+DPSS DYQ VH+ G  F I+P VIN                  KYVILHKIGIANWFPS+HASSVS  L 
Subjt:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVIN----------------HFKYVILHKIGIANWFPSTHASSVSIALA

Query:  NLIYLIGIKTLVDCYAC--------STSFCVK----------------------WARCADSAPKTLSLSYRLFQGSHVPDI---VHLMRPPHRVDPDLPV
          +Y I     VD  A           SF VK                       +      PKTL+LSYRLFQGS+VPDI   VH  + P   D    +
Subjt:  NLIYLIGIKTLVDCYAC--------STSFCVK----------------------WARCADSAPKTLSLSYRLFQGSHVPDI---VHLMRPPHRVDPDLPV

Query:  GVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE
          W    DG  +   L SRIL  L  ESRSLS  I  +SE
Subjt:  GVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE

TrEMBL top hitse value%identityAlignment
A0A5A7U8Y1 Reverse transcriptase Ty1/copia-type domain-containing protein1.3e-3142.92Show/hide
Query:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVIN----------------HFKYVILHKIGIANWFPSTHASSVSIALA
        AG++KT++ VGPFYP+L+ E +VN P  F+DPSS DYQ VH+ G  F I+P VIN                  KYVILHKIGIANWFPS+HASSVS  L 
Subjt:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVIN----------------HFKYVILHKIGIANWFPSTHASSVSIALA

Query:  NLIYLIGIKTLVDCYAC--------STSFCVK----------------------WARCADSAPKTLSLSYRLFQGSHVPDI---VHLMRPPHRVDPDLPV
          +Y I     VD  A           SF VK                       +      PKTL+LSYRLFQGS+VPDI   VH  + P   D    +
Subjt:  NLIYLIGIKTLVDCYAC--------STSFCVK----------------------WARCADSAPKTLSLSYRLFQGSHVPDI---VHLMRPPHRVDPDLPV

Query:  GVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE
          W    DG  +   L SRIL  L  ESRSLS  I  +SE
Subjt:  GVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE

A0A5A7VFF7 Uncharacterized protein1.9e-3241.98Show/hide
Query:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------
        AG++KT++ VGPFYP+LI E +VNLP +F+DPSS +YQ VH+ G  F I+P VIN F                                           
Subjt:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------

Query:  KYVILHKIGIANWFPSTHASSVSIALANLIYLI--------GIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDIVHLMRPPHRVDPDL
        KYVILHKIGIANWFPS+HASSVS AL   +Y I        G+   ++    +TS          S P TL+LSYRLFQ SHVPDI H + P    +P L
Subjt:  KYVILHKIGIANWFPSTHASSVSIALANLIYLI--------GIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDIVHLMRPPHRVDPDL

Query:  -PVGVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE
             W    DG  +   L SRIL  L A+SRSLS  I  +SE
Subjt:  -PVGVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE

A0A5A7VFI0 Uncharacterized protein1.3e-3140.45Show/hide
Query:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------
        AG++KT++ VGPF+P+LI E +VNLPT+F+DPS  DYQ VH+ G  F+ITP VIN F                                           
Subjt:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------

Query:  KYVILHKIGIANWFPSTHASSVSIALANLIYLIGIKTLVDC--------YACSTSFCVK----------------------WARCADSAPKTLSLSYRLF
        KY ILHKIGIANWFPS+HASSVS AL N +Y I     VD              SF VK                       +   D  PKTLSLSYRLF
Subjt:  KYVILHKIGIANWFPSTHASSVSIALANLIYLIGIKTLVDC--------YACSTSFCVK----------------------WARCADSAPKTLSLSYRLF

Query:  QGSHVPDI---VHLMRPPHRVDPDLPVGVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE
        QG+HV DI   VH  R P   D       W    DG  +   L SRIL  L AESRSL   I  +SE
Subjt:  QGSHVPDI---VHLMRPPHRVDPDLPVGVW-MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE

A0A5D3CB78 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-3252.9Show/hide
Query:  GMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------KYVILHKIGIANWFPSTHASSVSIA
        G++K ++ VGPFYP+LI E +VNLP+EF++PSSSDYQ VH+ GL FNI+P VIN F                   KYVILHKIGIANWF S+HAS+V +A
Subjt:  GMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------KYVILHKIGIANWFPSTHASSVSIA

Query:  LANLIYLIGIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDIVH
        L   +Y I     VD    + +          S PKTLSLSYRLFQGSHVPDI H
Subjt:  LANLIYLIGIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDIVH

A0A5D3E526 Uncharacterized protein2.3e-3343.04Show/hide
Query:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------
        AG++KT++ VGPFYP+LI E +VNLP +F+DPSS DYQ VH+ G  F I+P VIN F                                           
Subjt:  AGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHF-------------------------------------------

Query:  KYVILHKIGIANWFPSTHASSVSIALANLIYLIGIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDI---VHLMRPPHRVDPDLPVGVW
        KYVILHKI IANWFPS HASSVS+ L   +Y I     VD            A   D  P TLSLSYRLFQG+HVPDI   VH  R P   D       W
Subjt:  KYVILHKIGIANWFPSTHASSVSIALANLIYLIGIKTLVDCYACSTSFCVKWARCADSAPKTLSLSYRLFQGSHVPDI---VHLMRPPHRVDPDLPVGVW

Query:  -MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE
            +G  +   L SRIL  L  ESRSLS  I  +SE
Subjt:  -MPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGCTGGAATGACCAAGACAGTCACCAAGGTTGGTCCCTTCTATCCCCGTCTGATTTATGAGCTTCTTGTTAACCTCCCGACTGAATTTGATGATCCGAGTAGTTC
TGACTATCAAAAGGTTCATGTCTGTGGCTTGTGCTTCAATATCACCCCTGTTGTCATCAATCATTTCAAATATGTCATTCTACACAAGATTGGCATTGCCAACTGGTTTC
CCTCTACTCATGCCTCAAGTGTCTCCATTGCCTTGGCTAATCTTATTTATCTTATTGGCATCAAGACTCTTGTTGATTGTTATGCTTGCTCAACATCCTTCTGTGTTAAA
TGGGCACGATGTGCCGACTCAGCTCCTAAGACTCTCAGCCTTAGCTATCGTTTGTTTCAAGGTTCTCATGTCCCTGATATTGTTCATCTTATGCGTCCTCCACACCGTGT
TGACCCTGATCTTCCTGTTGGTGTTTGGATGCCAGATGATGGTGTGTTGCTTCCTCCTACTCTGACCTCTCGCATTCTTCAACTTCTTTTGGCTGAGTCCCGCTCTTTGA
GTGGTCTCATTCAAACCTTGTCTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGGCTGGAATGACCAAGACAGTCACCAAGGTTGGTCCCTTCTATCCCCGTCTGATTTATGAGCTTCTTGTTAACCTCCCGACTGAATTTGATGATCCGAGTAGTTC
TGACTATCAAAAGGTTCATGTCTGTGGCTTGTGCTTCAATATCACCCCTGTTGTCATCAATCATTTCAAATATGTCATTCTACACAAGATTGGCATTGCCAACTGGTTTC
CCTCTACTCATGCCTCAAGTGTCTCCATTGCCTTGGCTAATCTTATTTATCTTATTGGCATCAAGACTCTTGTTGATTGTTATGCTTGCTCAACATCCTTCTGTGTTAAA
TGGGCACGATGTGCCGACTCAGCTCCTAAGACTCTCAGCCTTAGCTATCGTTTGTTTCAAGGTTCTCATGTCCCTGATATTGTTCATCTTATGCGTCCTCCACACCGTGT
TGACCCTGATCTTCCTGTTGGTGTTTGGATGCCAGATGATGGTGTGTTGCTTCCTCCTACTCTGACCTCTCGCATTCTTCAACTTCTTTTGGCTGAGTCCCGCTCTTTGA
GTGGTCTCATTCAAACCTTGTCTGAGTAG
Protein sequenceShow/hide protein sequence
MLAGMTKTVTKVGPFYPRLIYELLVNLPTEFDDPSSSDYQKVHVCGLCFNITPVVINHFKYVILHKIGIANWFPSTHASSVSIALANLIYLIGIKTLVDCYACSTSFCVK
WARCADSAPKTLSLSYRLFQGSHVPDIVHLMRPPHRVDPDLPVGVWMPDDGVLLPPTLTSRILQLLLAESRSLSGLIQTLSE