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PI0027061 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027061
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr01:13622342..13622631
RNA-Seq ExpressionPI0027061
SyntenyPI0027061
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012832904.1 PREDICTED: uncharacterized protein LOC105953771 [Erythranthe guttata]1.9e-1875Show/hide
Query:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI
        MCDASD AV A+LGQ++NK+ H IYYASKTL DAQ NYTTTEKELL +VFA EKFRSY+IG+K+
Subjt:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI

XP_012837475.1 PREDICTED: uncharacterized protein LOC105958021 [Erythranthe guttata]1.9e-1875Show/hide
Query:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI
        MCDASD AV A+LGQ++NK+ H IYYASKTL DAQ NYTTTEKELL +VFA EKFRSY+IG+K+
Subjt:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI

XP_012838027.1 PREDICTED: uncharacterized protein LOC105958568 [Erythranthe guttata]1.5e-1876.56Show/hide
Query:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI
        MCDASD AV A+LGQ++NK+ H IYYASKTL DAQ NYTTTEKELL IVFA EKFRSY+IG+K+
Subjt:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI

XP_022152366.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 [Momordica charantia]2.9e-1973.44Show/hide
Query:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI
        MCDASD A+ AMLGQ++NK++HP+YYASKTLT AQ NYTTTEKELL +VFA +KFRSY+IG+K+
Subjt:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI

XP_022158979.1 uncharacterized protein LOC111025424 [Momordica charantia]1.9e-1873.02Show/hide
Query:  CDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI
        CDASD A+ AMLGQ++NK++HP+YYASKTLT AQ NYTTTEKELL +VFA  KFRSY+IG+K+
Subjt:  CDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI

TrEMBL top hitse value%identityAlignment
A0A5D3CVE7 Uncharacterized protein1.6e-1873.44Show/hide
Query:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI
        M DASDVA+  MLGQK+ KVIHPIYY SKTL +A+ENYTTTEK+ L +VFA+EKFRSYI+GSK+
Subjt:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI

A0A6J1DCL7 LOW QUALITY PROTEIN: uncharacterized protein LOC1110195151.2e-1871.88Show/hide
Query:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI
        MCDASD A+ AMLGQ++NK++HP+YYASKTLT AQ NYTTTEKELL IVF  +KFR Y+IG+K+
Subjt:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI

A0A6J1DHH9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110201101.4e-1973.44Show/hide
Query:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI
        MCDASD A+ AMLGQ++NK++HP+YYASKTLT AQ NYTTTEKELL +VFA +KFRSY+IG+K+
Subjt:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI

A0A6J1E110 uncharacterized protein LOC1110254249.2e-1973.02Show/hide
Query:  CDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI
        CDASD A+ AMLGQ++NK++HP+YYASKTLT AQ NYTTTEKELL +VFA  KFRSY+IG+K+
Subjt:  CDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI

A0A6J1E3L7 uncharacterized protein LOC1110257541.2e-1871.88Show/hide
Query:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI
        MCDASD A+ AMLGQ++NK++HP+YYASKTLT AQ NYTTTEKELL +VFA +K RSY+IG+K+
Subjt:  MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.69.2e-0850.85Show/hide
Query:  DASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIG
        DASDVA+ A+L Q      HP+ Y S+TL + + NY+T EKELL IV+A + FR Y++G
Subjt:  DASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIG

P0CT41 Transposon Tf2-12 polyprotein1.6e-0441.38Show/hide
Query:  DASDVAVVAMLGQKR-NKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYI
        DASDVAV A+L QK  +   +P+ Y S  ++ AQ NY+ ++KE+L I+ +++ +R Y+
Subjt:  DASDVAVVAMLGQKR-NKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYI

P20825 Retrovirus-related Pol polyprotein from transposon 2971.3e-0647.46Show/hide
Query:  DASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIG
        DAS++A+ A+L Q      HPI + S+TL D + NY+  EKELL IV+A + FR Y++G
Subjt:  DASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIG

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus6.6e-0640Show/hide
Query:  DASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGS
        DAS+ A+ A+L Q       PI Y S++L   +ENY T EKE+L I+++++  R+Y+ G+
Subjt:  DASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGS

Q9UR07 Transposon Tf2-11 polyprotein1.6e-0441.38Show/hide
Query:  DASDVAVVAMLGQKR-NKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYI
        DASDVAV A+L QK  +   +P+ Y S  ++ AQ NY+ ++KE+L I+ +++ +R Y+
Subjt:  DASDVAVVAMLGQKR-NKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGACGCGAGTGATGTTGCGGTAGTGGCTATGCTGGGGCAAAAGAGAAACAAAGTGATCCACCCTATATATTACGCGAGCAAGACTCTTACAGACGCTCAAGAAAA
CTACACTACCACGGAAAAGGAGCTGCTTACGATAGTATTTGCGGTAGAGAAGTTCAGGAGTTACATAATTGGCTCCAAAATTCCTCATGGCGAAGAAGGAGGCAAAACCG
CGGTTAATCAGATGGGTGTTATTACTCCAAGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGACGCGAGTGATGTTGCGGTAGTGGCTATGCTGGGGCAAAAGAGAAACAAAGTGATCCACCCTATATATTACGCGAGCAAGACTCTTACAGACGCTCAAGAAAA
CTACACTACCACGGAAAAGGAGCTGCTTACGATAGTATTTGCGGTAGAGAAGTTCAGGAGTTACATAATTGGCTCCAAAATTCCTCATGGCGAAGAAGGAGGCAAAACCG
CGGTTAATCAGATGGGTGTTATTACTCCAAGAATTTGA
Protein sequenceShow/hide protein sequence
MCDASDVAVVAMLGQKRNKVIHPIYYASKTLTDAQENYTTTEKELLTIVFAVEKFRSYIIGSKIPHGEEGGKTAVNQMGVITPRI