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PI0027088 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027088
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr06:11257656..11258000
RNA-Seq ExpressionPI0027088
SyntenyPI0027088
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035024.1 hypothetical protein E6C27_scaffold57G00740 [Cucumis melo var. makuwa]3.0e-1968.42Show/hide
Query:  FAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWWTLYVARV
        F    + KRFG ERLKALGATTFEGTTNPA+ E WL LIEKYF VM    E+ VKLAT LL+GS EDWWT + ARV
Subjt:  FAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWWTLYVARV

KAA0054739.1 uncharacterized protein E6C27_scaffold437G00090 [Cucumis melo var. makuwa]9.1e-2458.88Show/hide
Query:  MPRRGKGRG-GQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDW
        MPRR + RG GQAS  A+LVN   R ER++  FAK NLE +F  ERLKALGATT+EG  +PA+ E WLRL+ K F V+  P+ ++VKLATFLLEG+A+DW
Subjt:  MPRRGKGRG-GQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDW

Query:  WTLYVAR
        W L+ A+
Subjt:  WTLYVAR

KAA0064147.1 uncharacterized protein E6C27_scaffold548G00700 [Cucumis melo var. makuwa]5.2e-1953.51Show/hide
Query:  MPRRGKGRGGQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWW
        MP+RG+G GGQ S  AQ VN   R ER+E+ FAK+NLEK+F  +RLK LGA TFE T N  D       +EKYF V+   EE++VKLATF LEG+ +D W
Subjt:  MPRRGKGRGGQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWW

Query:  TLYVARVGIVEFVT
         LY  +   V+FVT
Subjt:  TLYVARVGIVEFVT

TYJ99705.1 uncharacterized protein E5676_scaffold562G001040 [Cucumis melo var. makuwa]1.4e-2760Show/hide
Query:  MPRRGKGRG-GQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDW
        +PRRG+ RG GQAS  A+LVN   R ER++  FAK NLE +F  ERLKALGATT+EG  +PAD E WLRL+ K F V+  P+ ++VKLATFLLEG+A+DW
Subjt:  MPRRGKGRG-GQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDW

Query:  WTLYVARVGIVEFVT
        W L+ A+VG V+FV+
Subjt:  WTLYVARVGIVEFVT

TYK16014.1 uncharacterized protein E5676_scaffold3068G00100 [Cucumis melo var. makuwa]5.2e-1953.51Show/hide
Query:  MPRRGKGRGGQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWW
        MP+RG+G GGQ S  AQ VN   R ER+E+ FAK+NLEK+F  +RLK LGA TFE T N  D       +EKYF V+   EE++VKLATF LEG+ +D W
Subjt:  MPRRGKGRGGQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWW

Query:  TLYVARVGIVEFVT
         LY  +   V+FVT
Subjt:  TLYVARVGIVEFVT

TrEMBL top hitse value%identityAlignment
A0A5A7UMQ3 Uncharacterized protein4.4e-2458.88Show/hide
Query:  MPRRGKGRG-GQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDW
        MPRR + RG GQAS  A+LVN   R ER++  FAK NLE +F  ERLKALGATT+EG  +PA+ E WLRL+ K F V+  P+ ++VKLATFLLEG+A+DW
Subjt:  MPRRGKGRG-GQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDW

Query:  WTLYVAR
        W L+ A+
Subjt:  WTLYVAR

A0A5A7VAV1 Retrotrans_gag domain-containing protein2.5e-1953.51Show/hide
Query:  MPRRGKGRGGQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWW
        MP+RG+G GGQ S  AQ VN   R ER+E+ FAK+NLEK+F  +RLK LGA TFE T N  D       +EKYF V+   EE++VKLATF LEG+ +D W
Subjt:  MPRRGKGRGGQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWW

Query:  TLYVARVGIVEFVT
         LY  +   V+FVT
Subjt:  TLYVARVGIVEFVT

A0A5D3BN18 Uncharacterized protein6.6e-2860Show/hide
Query:  MPRRGKGRG-GQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDW
        +PRRG+ RG GQAS  A+LVN   R ER++  FAK NLE +F  ERLKALGATT+EG  +PAD E WLRL+ K F V+  P+ ++VKLATFLLEG+A+DW
Subjt:  MPRRGKGRG-GQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDW

Query:  WTLYVARVGIVEFVT
        W L+ A+VG V+FV+
Subjt:  WTLYVARVGIVEFVT

A0A5D3BTQ7 Uncharacterized protein1.5e-1968.42Show/hide
Query:  FAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWWTLYVARV
        F    + KRFG ERLKALGATTFEGTTNPA+ E WL LIEKYF VM    E+ VKLAT LL+GS EDWWT + ARV
Subjt:  FAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWWTLYVARV

A0A5D3CYI7 Retrotrans_gag domain-containing protein2.5e-1953.51Show/hide
Query:  MPRRGKGRGGQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWW
        MP+RG+G GGQ S  AQ VN   R ER+E+ FAK+NLEK+F  +RLK LGA TFE T N  D       +EKYF V+   EE++VKLATF LEG+ +D W
Subjt:  MPRRGKGRGGQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWW

Query:  TLYVARVGIVEFVT
         LY  +   V+FVT
Subjt:  TLYVARVGIVEFVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAGAAGAGGCAAAGGAAGAGGAGGACAAGCCTCGAATTTAGCACAATTAGTTAATGAGCCAACAAGGGGAGAAAGAGAAGAGCAACCGTTTGCTAAGATGAATTT
AGAAAAGCGGTTTGGCAATGAAAGATTGAAGGCATTAGGAGCTACGACTTTCGAAGGGACTACAAACCCAGCTGACGCGGAAATATGGCTAAGATTGATTGAGAAATATT
TTATGGTGATGGATTATCCTGAAGAAAAAAGAGTTAAGTTGGCCACGTTTTTGCTAGAAGGAAGTGCGGAAGATTGGTGGACCCTGTATGTGGCAAGGGTAGGAATAGTA
GAATTTGTCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAGAAGAGGCAAAGGAAGAGGAGGACAAGCCTCGAATTTAGCACAATTAGTTAATGAGCCAACAAGGGGAGAAAGAGAAGAGCAACCGTTTGCTAAGATGAATTT
AGAAAAGCGGTTTGGCAATGAAAGATTGAAGGCATTAGGAGCTACGACTTTCGAAGGGACTACAAACCCAGCTGACGCGGAAATATGGCTAAGATTGATTGAGAAATATT
TTATGGTGATGGATTATCCTGAAGAAAAAAGAGTTAAGTTGGCCACGTTTTTGCTAGAAGGAAGTGCGGAAGATTGGTGGACCCTGTATGTGGCAAGGGTAGGAATAGTA
GAATTTGTCACTTGA
Protein sequenceShow/hide protein sequence
MPRRGKGRGGQASNLAQLVNEPTRGEREEQPFAKMNLEKRFGNERLKALGATTFEGTTNPADAEIWLRLIEKYFMVMDYPEEKRVKLATFLLEGSAEDWWTLYVARVGIV
EFVT