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PI0027093 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027093
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:6614111..6614320
RNA-Seq ExpressionPI0027093
SyntenyPI0027093
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]5.7e-0560Show/hide
Query:  RMTSSSRALKHTWTREEESTLMECLVELVPAG---DGNRTTAHSNLVTWQ
        +MTSSSRA KHTWT+EEE+ L+ECLVELV AG     N T  H  L   Q
Subjt:  RMTSSSRALKHTWTREEESTLMECLVELVPAG---DGNRTTAHSNLVTWQ
KAA0045312.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-0572.97Show/hide
Query:  SSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHS
        SSRALKH WT+EEE+  +ECLVELV AGDG+RT A S
Subjt:  SSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHS
KAA0055383.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-0552.08Show/hide
Query:  MTSSSRALKHTWTREEESTLMECLVELVPAGDGNR---TTAHSNLVTW
        M++S+R L+H WT+EE+ TL+ECL+ELV  GDGN+    +A  NL +W
Subjt:  MTSSSRALKHTWTREEESTLMECLVELVPAGDGNR---TTAHSNLVTW
KAA0056508.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-0968.89Show/hide
Query:  MTSSSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHSNLVTW
        M++S+RA +H WT+EEE TLMECLVELV  GDGNR  AHS+ VTW
Subjt:  MTSSSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHSNLVTW
TYK08786.1 retrotransposon protein [Cucumis melo var. makuwa]8.0e-0778.38Show/hide
Query:  SSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHS
        SSRALKH WT+EEE+ L+ECLVELV AGDG+RT AHS
Subjt:  SSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHS
TrEMBL top hitse value%identityAlignment
A0A5A7TJS2 Retrotransposon protein2.8e-0560Show/hide
Query:  RMTSSSRALKHTWTREEESTLMECLVELVPAG---DGNRTTAHSNLVTWQ
        +MTSSSRA KHTWT+EEE+ L+ECLVELV AG     N T  H  L   Q
Subjt:  RMTSSSRALKHTWTREEESTLMECLVELVPAG---DGNRTTAHSNLVTWQ
A0A5A7TPM0 Retrotransposon protein2.1e-0572.97Show/hide
Query:  SSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHS
        SSRALKH WT+EEE+  +ECLVELV AGDG+RT A S
Subjt:  SSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHS
A0A5A7UHG9 Retrotransposon protein2.1e-0552.08Show/hide
Query:  MTSSSRALKHTWTREEESTLMECLVELVPAGDGNR---TTAHSNLVTW
        M++S+R L+H WT+EE+ TL+ECL+ELV  GDGN+    +A  NL +W
Subjt:  MTSSSRALKHTWTREEESTLMECLVELVPAGDGNR---TTAHSNLVTW
A0A5D3CEJ9 Retrotransposon protein3.9e-0778.38Show/hide
Query:  SSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHS
        SSRALKH WT+EEE+ L+ECLVELV AGDG+RT AHS
Subjt:  SSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHS
A0A5D3CLR3 Retrotransposon protein1.9e-0968.89Show/hide
Query:  MTSSSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHSNLVTW
        M++S+RA +H WT+EEE TLMECLVELV  GDGNR  AHS+ VTW
Subjt:  MTSSSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHSNLVTW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGTGCATTTACATTTTCTATATATCGTTCGCTTAATATCCATCTTATGTTTCCTATTTGTTAGAATGACAAGTTCGTCGAGGGCCCTAAAGCATACATGGACCAG
AGAAGAAGAGTCAACCCTCATGGAATGTCTGGTGGAGTTGGTCCCCGCGGGGGATGGAAATCGGACAACGGCACATTCAAACTTGGTTACTTGGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGTGCATTTACATTTTCTATATATCGTTCGCTTAATATCCATCTTATGTTTCCTATTTGTTAGAATGACAAGTTCGTCGAGGGCCCTAAAGCATACATGGACCAG
AGAAGAAGAGTCAACCCTCATGGAATGTCTGGTGGAGTTGGTCCCCGCGGGGGATGGAAATCGGACAACGGCACATTCAAACTTGGTTACTTGGCAATGA
Protein sequenceShow/hide protein sequence
MGVHLHFLYIVRLISILCFLFVRMTSSSRALKHTWTREEESTLMECLVELVPAGDGNRTTAHSNLVTWQ