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PI0027136 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027136
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:10535066..10535611
RNA-Seq ExpressionPI0027136
SyntenyPI0027136
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]4.9e-6470.95Show/hide
Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S+NQG+NLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS
        SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P ++EK  ++  L ++ +N+ KEE  E N S
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS

KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-6270.39Show/hide
Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI
        MLNMT LLTSFVQG  +KVTKCGVC L+GH NDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S+NQG+NLED++KALATNT 
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS
        SFQ EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL  P ++EK  ++  L ++ +N+ KEE  E N S
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-6168.72Show/hide
Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+NQG+NLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS
        SFQ EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL  P ++EK  ++  L ++ +N+ KEE  E N S
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-6168.72Show/hide
Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVCGL+GHPNDK P+++E+ N++R+YDP GNTYN+GWRDNP LRWGN+NQ+  QA  +S+NQG+NLED++KALA NT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS
        SFQ EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL  P ++EK  ++  L ++ +N+ KEEN E N S
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]1.9e-6369.44Show/hide
Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVCGL+G+PNDKCP ++E+ N++R+YDP GNTYN GWRDNPNLRWGN+NQ+ TQA P+S+NQG+NLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNASS
        SFQ +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL  P ++EK  ++  L ++ +N+ KEE  E N+SS
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNASS

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032919.0e-6469.44Show/hide
Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVCGL+G+PNDKCP ++E+ N++R+YDP GNTYN GWRDNPNLRWGN+NQ+ TQA P+S+NQG+NLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNASS
        SFQ +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL  P ++EK  ++  L ++ +N+ KEE  E N+SS
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNASS

A0A5A7T4R3 Retrotransposon gag protein7.6e-6370.39Show/hide
Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI
        MLNMT LLTSFVQG  +KVTKCGVC L+GH NDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S+NQG+NLED++KALATNT 
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS
        SFQ EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSGKIL  P ++EK  ++  L ++ +N+ KEE  E N S
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS

A0A5A7VE49 Retrotransposon gag protein1.4e-6168.72Show/hide
Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVCGL+GHPNDK P+++E+ N++R+YDP GNTYN+GWRDNP LRWGN+NQ+  QA  +S+NQG+NLED++KALA NT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS
        SFQ EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL  P ++EK  ++  L ++ +N+ KEEN E N S
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS

A0A5D3CRR8 Retrotransposon gag protein6.5e-6268.72Show/hide
Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+ TQA  +S+NQG+NLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS
        SFQ EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL  P ++EK  ++  L ++ +N+ KEE  E N S
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS

E5GBZ4 Retrotransposon gag protein2.4e-6470.95Show/hide
Query:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KVTKCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+ TQA P+S+NQG+NLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTI

Query:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS
        SFQ EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL  P ++EK  ++  L ++ +N+ KEE  E N S
Subjt:  SFQNEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQID-ENKKKEENKENNAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTACCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGA
CCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAAC
CCACGCAAGCAACTCCTTCTTCAAACAATCAAGGTAGTAATTTGGAGGACTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATG
TCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGCGCCATCTCACTTAGAAGTGGTAAAATTCTGCA
ACCCCCTCCAAGTGAAGAAAAGGTACCTTCTAACCCCGACCTTCAAATTGATGAAAACAAGAAAAAGGAAGAAAATAAAGAAAACAATGCCTCTTCTCCTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTACCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGA
CCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAAC
CCACGCAAGCAACTCCTTCTTCAAACAATCAAGGTAGTAATTTGGAGGACTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATG
TCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGCGCCATCTCACTTAGAAGTGGTAAAATTCTGCA
ACCCCCTCCAAGTGAAGAAAAGGTACCTTCTAACCCCGACCTTCAAATTGATGAAAACAAGAAAAAGGAAGAAAATAAAGAAAACAATGCCTCTTCTCCTTTTTAA
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGNVKVTKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPTQATPSSNNQGSNLEDLVKALATNTISFQNEMKQQM
SQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKVPSNPDLQIDENKKKEENKENNASSPF