; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027160 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027160
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein L35
Genome locationchr02:20886138..20888469
RNA-Seq ExpressionPI0027160
SyntenyPI0027160
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001706 - Ribosomal protein L35, non-mitochondrial
IPR018265 - Ribosomal protein L35, conserved site
IPR021137 - Ribosomal protein L35
IPR037229 - Ribosomal protein L35 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035109.1 50S ribosomal protein L35 [Cucumis melo var. makuwa]3.8e-7094.04Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFR+SHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQK  HISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNAKRRLRLSK+HPVSRSDYDNVIGALPYLK + + K
Subjt:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_004146668.1 50S ribosomal protein L35, chloroplastic [Cucumis sativus]8.5e-7094.04Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFR+SHTSVG+AS NKVNSLKLSSSHNISGFG N LQKP HISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLL KKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_008443834.1 PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo]7.4e-7497.35Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFR+SHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP HISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNAKRRLRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_022135558.1 50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia]1.5e-6186.18Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLA-SFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRG
        MASAS  VSFGLRFSPLCSRPS R+SH SV LA SFNKVNSL+L SS NISGFG+  LQK  HI+PTSQ+HTP TV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLA-SFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKN KR+LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

XP_038878434.1 50S ribosomal protein L35, chloroplastic [Benincasa hispida]1.8e-6792.05Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVS GLRFSPL SRPS R+SH+SVGLASFNK NSLKLSSS+NISGFG+ FLQKP HISPT QIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKN KRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

TrEMBL top hitse value%identityAlignment
A0A0A0LYX0 50S ribosomal protein L354.1e-7094.04Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFR+SHTSVG+AS NKVNSLKLSSSHNISGFG N LQKP HISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLL KKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A1S3B9R8 50S ribosomal protein L353.6e-7497.35Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFR+SHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP HISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNAKRRLRLSK+HPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A5D3B7R7 50S ribosomal protein L351.8e-7094.04Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFR+SHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQK  HISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKNAKRRLRLSK+HPVSRSDYDNVIGALPYLK + + K
Subjt:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1C550 50S ribosomal protein L357.0e-6286.18Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLA-SFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRG
        MASAS  VSFGLRFSPLCSRPS R+SH SV LA SFNKVNSL+L SS NISGFG+  LQK  HI+PTSQ+HTP TV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLA-SFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        KIVRRRAGKQHLLYKKN KR+LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  KIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

A0A6J1JDG6 50S ribosomal protein L352.3e-6083.44Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASAS +VSFGLRFSPLCSR S R+S  SV L S NK  SL+LSSSHN+S FG+  LQKP HI+P+S+IHTPFTV AAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
        IVRRRAGKQHLLYKKN KR+LRLSKMHPVSRSDYDNVIGALPYLKVNRQAK
Subjt:  IVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK

SwissProt top hitse value%identityAlignment
P23326 50S ribosomal protein L35, chloroplastic4.3e-3260Show/hide
Query:  MASASMAVSF---GLRFSPLCSRPSFRISHT-SVGLASFNK--VNSLKLSSSHNISGFGLN-FLQKPPHISPT-SQIHT---PFTVFAAKGYKMKTHKAS
        MASA+  +SF    L  SP    PS R S    + L  FNK   ++L LSSS +IS   +   + K   IS   S + T    FTVFAAKGYKMKTHKAS
Subjt:  MASASMAVSF---GLRFSPLCSRPSFRISHT-SVGLASFNK--VNSLKLSSSHNISGFGLN-FLQKPPHISPT-SQIHT---PFTVFAAKGYKMKTHKAS

Query:  AKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQ
        AKRFRVTG+GKIVRRRAGKQHLL KKN KR+ RLSK+  V RSDYDNVIGALPYLKVNR+
Subjt:  AKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQ

Q31NR1 50S ribosomal protein L353.0e-0954.84Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPY
        K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+   V  +D + V   LPY
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPY

Q5N5F4 50S ribosomal protein L353.0e-0954.84Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPY
        K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+   V  +D + V   LPY
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPY

Q8VZ55 50S ribosomal protein L35, chloroplastic3.9e-3362.5Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRIS-HTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHI-SPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGR
        MAS SMA S  + F       S ++S  +SV  A+        LSSSH+ISG       K   + SP SQ    FTVFA KGYKMKTHKASAKRFRVTGR
Subjt:  MASASMAVSFGLRFSPLCSRPSFRIS-HTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHI-SPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGR

Query:  GKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA
        GKIVRRR+GKQHLL KKN KR+LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Subjt:  GKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA

Q8YRL9 50S ribosomal protein L353.9e-0955.56Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+A K HLL  K   ++ + SKM  V+  D +NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYL

Arabidopsis top hitse value%identityAlignment
AT2G24090.1 Ribosomal protein L352.8e-3462.5Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRIS-HTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHI-SPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGR
        MAS SMA S  + F       S ++S  +SV  A+        LSSSH+ISG       K   + SP SQ    FTVFA KGYKMKTHKASAKRFRVTGR
Subjt:  MASASMAVSFGLRFSPLCSRPSFRIS-HTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHI-SPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGR

Query:  GKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA
        GKIVRRR+GKQHLL KKN KR+LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Subjt:  GKIVRRRAGKQHLLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCGCCACTCTGCTCTCGCCCATCATTTCGCATCTCTCATACTTCCGTCGGGCTTGCTTCTTTCAACAA
GGTCAATTCCTTGAAGCTTAGTTCCTCCCACAACATTTCCGGCTTTGGACTCAATTTCCTTCAGAAGCCACCTCACATTTCTCCCACTTCTCAAATTCATACTCCTTTCA
CTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCAT
TTGCTGTACAAGAAGAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAA
TAGGCAGGCCAAGTAG
mRNA sequenceShow/hide mRNA sequence
TCCGAACAGCAGGCCGAGTCTGAGGCTCGTAGAGATTGGTAAGAAGAAGAAGAAGAAGAAGAAAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATG
GCGGTGTCCTTTGGTCTTAGGTTCTCGCCACTCTGCTCTCGCCCATCATTTCGCATCTCTCATACTTCCGTCGGGCTTGCTTCTTTCAACAAGGTCAATTCCTTGAAGCT
TAGTTCCTCCCACAACATTTCCGGCTTTGGACTCAATTTCCTTCAGAAGCCACCTCACATTTCTCCCACTTCTCAAATTCATACTCCTTTCACTGTTTTCGCTGCTAAAG
GCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAAC
GCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCAAGTAGAA
GTGATCTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCAAATGATTTTCAATTTTCCAGAAATCATCAAAGGGCAAAGTTTGATTGCTTAAAAATATTATTTGTT
CTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTCAGTTCCCTTCCTCTATTGTTGGCTAATCTGACAGGCTACAAGATGGAGCTTATTTCTTCTGTAAAT
TATGAGTACCTGAGATGGTTCTTTTGCCCATATGGAAAATATCTGGTTCGTTTGCTT
Protein sequenceShow/hide protein sequence
MASASMAVSFGLRFSPLCSRPSFRISHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKPPHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQH
LLYKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAK