CuGenDBv2

Gene ID	PI0027206
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr09:10904746..10905036
RNA-Seq Expression	PI0027206
Synteny	PI0027206
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]

2.0e-40

89.58

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQ+VWDIV+NGYEE ESDAAL+QAQRE LQNTRKKDQKALTIIHQAIDD+NFEK S ATT +QAW
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

KAA0062322.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.0e-40

89.58

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQ+VWDIV+NGYEE ESDAAL+QAQRE LQNTRKKDQKALTIIHQAIDD+NFEK S ATT +QAW
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

TYK12007.1 copia protein [Cucumis melo var. makuwa]

1.5e-40

89.58

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        MANNNLVPFQVPRL KENYSSWCIRMKALLGSQ+VWDIV+NGYEE ESDAAL+QAQRE LQNTRKKDQKALTIIHQAIDD+NFEK SRATT +QAW
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.0e-40

89.58

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQ+VWDIV+NGYEE ESDAAL+QAQRE LQNTRKKDQKALTIIHQAIDD+NFEK S ATT +QAW
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

XP_031737535.1 uncharacterized protein LOC105435097 [Cucumis sativus]

1.8e-41

90.62

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        +ANNNLVPFQVPRLTKENYSSWCIRMKALLGSQ+VWDIVNNGYEE ESD ALSQAQRE LQNT+K+DQKALTIIHQAIDDSNFEK S ATTTHQAW
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLT1 Putative copia-type polyprotein

9.7e-41

89.58

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQ+VWDIV+NGYEE ESDAAL+QAQRE LQNTRKKDQKALTIIHQAIDD+NFEK S ATT +QAW
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

A0A5A7UDA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.7e-41

89.58

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQ+VWDIV+NGYEE ESDAAL+QAQRE LQNTRKKDQKALTIIHQAIDD+NFEK S ATT +QAW
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.7e-41

89.58

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQ+VWDIV+NGYEE ESDAAL+QAQRE LQNTRKKDQKALTIIHQAIDD+NFEK S ATT +QAW
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

A0A5D3CJ69 Copia protein

7.4e-41

89.58

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        MANNNLVPFQVPRL KENYSSWCIRMKALLGSQ+VWDIV+NGYEE ESDAAL+QAQRE LQNTRKKDQKALTIIHQAIDD+NFEK SRATT +QAW
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.7e-41

89.58

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQ+VWDIV+NGYEE ESDAAL+QAQRE LQNTRKKDQKALTIIHQAIDD+NFEK S ATT +QAW
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

1.2e-22

52.75

Show/hide

Query:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATT
        MA+NN VPFQVP LTK NY +W +RMKA+LG+ +VW+IV  G+ E E++ +LSQ Q++ L+++RK+D+KAL +I+Q +D+  FEK   AT+
Subjt:  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATT

AT3G21000.1 Gag-Pol-related retrotransposon family protein

5.5e-04

33.33

Show/hide

Query:  NYSSWCIRMKALLGSQNVWDIVNNGYEEQES--DAALSQAQRETLQNTRK---KDQKALTIIHQAIDDSNFEKTSRATTTHQAW
        +Y  W    K+ L  Q +WD+V NG  +  S      +  Q E L   R    KD KAL I+  ++ DS F KT  A++    W
Subjt:  NYSSWCIRMKALLGSQNVWDIVNNGYEEQES--DAALSQAQRETLQNTRK---KDQKALTIIHQAIDDSNFEKTSRATTTHQAW

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAAACAACAATTTAGTTCCCTTTCAAGTACCTCGACTTACAAAAGAAAATTATAGCAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAAATGTGTGGGA
CATTGTTAATAATGGTTATGAAGAACAAGAAAGTGATGCGGCTTTGAGTCAAGCTCAACGAGAAACTTTACAAAATACAAGGAAAAAAGATCAAAAGGCTCTCACCATCA
TTCATCAAGCCATTGATGATTCAAATTTTGAGAAAACTTCTAGAGCAACTACTACACATCAAGCATGGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQNVWDIVNNGYEEQESDAALSQAQRETLQNTRKKDQKALTIIHQAIDDSNFEKTSRATTTHQAW

PI0027206 (gene) of Melon (PI 482460) v1 genome