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PI0027208 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027208
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr10:17215026..17219796
RNA-Seq ExpressionPI0027208
SyntenyPI0027208
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047608.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1563.77Show/hide
Query:  MKGKVDESEAGTTVGTGSVDKANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPTE
        MKGK DE+E  + +G  SVDK   EK+KVAV+SF   EV+W+ WSNN +KVTSWEDLK RMF+HF PTE
Subjt:  MKGKVDESEAGTTVGTGSVDKANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPTE

KAA0048289.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-1352.69Show/hide
Query:  MKGKVDESEAGTTVGTGSVDKAN---HEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT-----EAPLRNSYNSNSYNKLV
        MKGK++E++  T V T  VD++N    EK+KV VVSF QDEV+WYRWS+N KKV SW+DLK RMFE F+ T      A L       SYN  V
Subjt:  MKGKVDESEAGTTVGTGSVDKAN---HEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT-----EAPLRNSYNSNSYNKLV

KAA0053231.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]3.1e-1556.25Show/hide
Query:  MKGKVDESEAGTTVGTGSVDK------------ANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT
        MKGK+++ E G+TV  G++DK            A++EK+KV V+SF QDE+NW+  SN+ KKVTSWEDLKQRMF HFQPT
Subjt:  MKGKVDESEAGTTVGTGSVDK------------ANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT

TYK07971.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-1352.69Show/hide
Query:  MKGKVDESEAGTTVGTGSVDKAN---HEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT-----EAPLRNSYNSNSYNKLV
        MKGK++E++  T V T  VD++N    EK+KV VVSF QDEV+WYRWS+N KKV SW+DLK RMFE F+ T      A L       SYN  V
Subjt:  MKGKVDESEAGTTVGTGSVDKAN---HEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT-----EAPLRNSYNSNSYNKLV

TYK23087.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-1269.23Show/hide
Query:  ANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQ-PTEAPL
        A+ EK+ + VVSF QD+V+W+RWSNNWKKVTSWEDLK+RMFEHF+ P E  L
Subjt:  ANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQ-PTEAPL

TrEMBL top hitse value%identityAlignment
A0A5A7U4B9 Ty3/gypsy retrotransposon protein1.8e-1352.69Show/hide
Query:  MKGKVDESEAGTTVGTGSVDKAN---HEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT-----EAPLRNSYNSNSYNKLV
        MKGK++E++  T V T  VD++N    EK+KV VVSF QDEV+WYRWS+N KKV SW+DLK RMFE F+ T      A L       SYN  V
Subjt:  MKGKVDESEAGTTVGTGSVDKAN---HEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT-----EAPLRNSYNSNSYNKLV

A0A5A7UI59 Protein NUCLEAR FUSION DEFECTIVE 61.5e-1556.25Show/hide
Query:  MKGKVDESEAGTTVGTGSVDK------------ANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT
        MKGK+++ E G+TV  G++DK            A++EK+KV V+SF QDE+NW+  SN+ KKVTSWEDLKQRMF HFQPT
Subjt:  MKGKVDESEAGTTVGTGSVDK------------ANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT

A0A5D3C7Y7 Ty3/gypsy retrotransposon protein1.4e-1352.69Show/hide
Query:  MKGKVDESEAGTTVGTGSVDKAN---HEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT-----EAPLRNSYNSNSYNKLV
        MKGK++E++  T V T  VD++N    EK+KV VVSF QDEV+WYRWS+N KKV SW+DLK RMFE F+ T      A L       SYN  V
Subjt:  MKGKVDESEAGTTVGTGSVDKAN---HEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPT-----EAPLRNSYNSNSYNKLV

A0A5D3C9T6 Retrotransposon protein6.7e-1663.77Show/hide
Query:  MKGKVDESEAGTTVGTGSVDKANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPTE
        MKGK DE+E  + +G  SVDK   EK+KVAV+SF   EV+W+ WSNN +KVTSWEDLK RMF+HF PTE
Subjt:  MKGKVDESEAGTTVGTGSVDKANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPTE

A0A5D3DHB0 Retrotransposon protein2.0e-1269.23Show/hide
Query:  ANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQ-PTEAPL
        A+ EK+ + VVSF QD+V+W+RWSNNWKKVTSWEDLK+RMFEHF+ P E  L
Subjt:  ANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQ-PTEAPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAAAAGTAGATGAGTCGGAGGCAGGTACGACGGTCGGAACCGGATCAGTAGACAAAGCCAATCATGAGAAGCTAAAGGTCGCAGTGGTTAGTTTCGTGCAAGA
CGAAGTGAACTGGTATCGGTGGAGCAACAATTGGAAGAAGGTAACATCATGGGAAGATTTGAAACAGAGAATGTTCGAACACTTCCAACCGACCGAAGCACCCCTCAGGA
ATAGCTACAATAGCAATAGCTACAATAAGCTTGTGGCAATAGTTTCAAAAAGAATGTTGGATAAAGATTGTATTCTTTTAGACAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAAAAGTAGATGAGTCGGAGGCAGGTACGACGGTCGGAACCGGATCAGTAGACAAAGCCAATCATGAGAAGCTAAAGGTCGCAGTGGTTAGTTTCGTGCAAGA
CGAAGTGAACTGGTATCGGTGGAGCAACAATTGGAAGAAGGTAACATCATGGGAAGATTTGAAACAGAGAATGTTCGAACACTTCCAACCGACCGAAGCACCCCTCAGGA
ATAGCTACAATAGCAATAGCTACAATAAGCTTGTGGCAATAGTTTCAAAAAGAATGTTGGATAAAGATTGTATTCTTTTAGACAGGTAAGAGTACGTTATTGTTGCAATC
AAGGTGTTTGGAATTGAAAGATTCCCAAGAGTTTTAGGTTTGTATCATGGAAAGTTTGAAATGAAAAGATGGAATGGTATATGATTGCTAGTCAGTTATGTACTAGTTTT
GAAGCTTGTGGATGGTAACGTGGTGTTTTCTTCTGATAGAGTGACAAAGAAGTTTGGAAACAGGAGGAAGTTTTAAAATATTGATGTAGTTTTTTTAAAGTGAATGTTAG
ACATAAAGATTAGACTTAATGTAATGTTTTCTTTTGATATATATTAATGTACCTTTTAGTGTAATATTTTTCAAAAATAAATATTAGATTGTACTTCATTATTCAACCTG
ATGTAAAAGGGAAAATGACTATCTAAAGGGCTATGTAGATCTAAATCTAATTGAAATTTTGTCAA
Protein sequenceShow/hide protein sequence
MKGKVDESEAGTTVGTGSVDKANHEKLKVAVVSFVQDEVNWYRWSNNWKKVTSWEDLKQRMFEHFQPTEAPLRNSYNSNSYNKLVAIVSKRMLDKDCILLDR