CuGenDBv2

Gene ID	PI0027209
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Cyclin T1
Genome location	chr05:21196757..21197877
RNA-Seq Expression	PI0027209
Synteny	PI0027209
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process) GO:0045737 - positive regulation of cyclin-dependent protein serine/threonine kinase activity (biological process) GO:0051301 - cell division (biological process) GO:0008024 - cyclin/CDK positive transcription elongation factor complex (cellular component) GO:0061575 - cyclin-dependent protein serine/threonine kinase activator activity (molecular function)
InterPro domains	IPR036915 - Cyclin-like superfamily IPR043198 - Cyclin/Cyclin-like subunit Ssn8

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593902.1 Cyclin-T1-5, partial [Cucurbita argyrosperma subsp. sororia]

6.1e-21

72.94

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Query:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL
        L  +L  I     +LV++A+  N     LRSSLWLQFKP QIAAGAAYLSAKL+NMDFAPYQNILQEFQATPAILQDVAQQLMEL
Subjt:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL

XP_004140152.1 cyclin-T1-5 [Cucumis sativus]

1.6e-21

74.12

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Query:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL
        L  +L  I     +LV++A+  N     LRSSLWLQFKPQQIAAGAAYLSAKL+NMDFAPYQNILQEFQATPAILQDVAQQLMEL
Subjt:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL

XP_008449564.1 PREDICTED: cyclin-T1-5-like isoform X1 [Cucumis melo]

1.6e-21

74.12

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Query:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL
        L  +L  I     +LV++A+  N     LRSSLWLQFKPQQIAAGAAYLSAKL+NMDFAPYQNILQEFQATPAILQDVAQQLMEL
Subjt:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL

XP_022930308.1 cyclin-T1-5-like isoform X1 [Cucurbita moschata]

6.1e-21

72.94

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Query:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL
        L  +L  I     +LV++A+  N     LRSSLWLQFKP QIAAGAAYLSAKL+NMDFAPYQNILQEFQATPAILQDVAQQLMEL
Subjt:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL

XP_022999857.1 cyclin-T1-5-like [Cucurbita maxima]

6.1e-21

72.94

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Query:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL
        L  +L  I     +LV++A+  N     LRSSLWLQFKP QIAAGAAYLSAKL+NMDFAPYQNILQEFQATPAILQDVAQQLMEL
Subjt:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KEU6 Uncharacterized protein

2.3e-34

85.26

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Query:  MSYDNDTIGNLPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL
        MSYDNDTIGNLPDILGNILPELLL             WLRSSLWLQFKPQQIAAGAAYLSAKL+NMDFAPYQNILQEFQATPAILQDVAQQLMEL
Subjt:  MSYDNDTIGNLPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL

A0A1S3BMA9 cyclin-T1-5-like isoform X1

7.7e-22

74.12

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Query:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL
        L  +L  I     +LV++A+  N     LRSSLWLQFKPQQIAAGAAYLSAKL+NMDFAPYQNILQEFQATPAILQDVAQQLMEL
Subjt:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL

A0A5A7V364 Cyclin-T1-5-like isoform X1

7.7e-22

74.12

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Query:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL
        L  +L  I     +LV++A+  N     LRSSLWLQFKPQQIAAGAAYLSAKL+NMDFAPYQNILQEFQATPAILQDVAQQLMEL
Subjt:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL

A0A6J1EUR8 cyclin-T1-5-like isoform X1

2.9e-21

72.94

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Query:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL
        L  +L  I     +LV++A+  N     LRSSLWLQFKP QIAAGAAYLSAKL+NMDFAPYQNILQEFQATPAILQDVAQQLMEL
Subjt:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL

A0A6J1KBY0 cyclin-T1-5-like

2.9e-21

72.94

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Query:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL
        L  +L  I     +LV++A+  N     LRSSLWLQFKP QIAAGAAYLSAKL+NMDFAPYQNILQEFQATPAILQDVAQQLMEL
Subjt:  LPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMEL

SwissProt top hits

e value

%identity

Alignment

Q2QQS5 Cyclin-T1-4

8.3e-05

45.76

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Query:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL
        LR+SL LQFKP  IAAGA +L+AK + +        +  QEF  TP  L++V+ Q++EL
Subjt:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL

Q2RAC5 Cyclin-T1-3

8.3e-05

45.76

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Query:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL
        LR+SL LQFKP  IAAGA +L+AK + +        +  QEF  TP  L++V+ Q++EL
Subjt:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL

Q56YF8 Cyclin-T1-2

4.4e-06

46.55

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Query:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL-QEFQATPAILQDVAQQLMEL
        LR++L LQ++P  IAAGA  L+A+L  +D   Y+ +L QEF  TP  L+D+  Q++EL
Subjt:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL-QEFQATPAILQDVAQQLMEL

Q8GYM6 Cyclin-T1-4

2.8e-05

47.46

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Query:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL
        LR+SL LQFKP  IAAGA +L+AK + +        +  QEF  TP  L+DV+ Q++EL
Subjt:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL

Q9FKE6 Cyclin-T1-5

2.8e-05

47.46

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Query:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL
        LR+SL LQFKP  IAAGA +L+AK + +        +  QEF  TP  L+DV+ Q++EL
Subjt:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL

Arabidopsis top hits

e value

%identity

Alignment

AT4G19560.1 Cyclin family protein

3.1e-07

46.55

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Query:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL-QEFQATPAILQDVAQQLMEL
        LR++L LQ++P  IAAGA  L+A+L  +D   Y+ +L QEF  TP  L+D+  Q++EL
Subjt:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL-QEFQATPAILQDVAQQLMEL

AT4G19600.1 Cyclin family protein

2.0e-06

47.46

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Query:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL
        LR+SL LQFKP  IAAGA +L+AK + +        +  QEF  TP  L+DV+ Q++EL
Subjt:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL

AT5G45190.1 Cyclin family protein

2.0e-06

47.46

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Query:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL
        LR+SL LQFKP  IAAGA +L+AK + +        +  QEF  TP  L+DV+ Q++EL
Subjt:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL

AT5G45190.2 Cyclin family protein

2.0e-06

47.46

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Query:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL
        LR+SL LQFKP  IAAGA +L+AK + +        +  QEF  TP  L+DV+ Q++EL
Subjt:  LRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNIL--QEFQATPAILQDVAQQLMEL

Sequences

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CDS sequence

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ATGTCATATGATAATGATACTATCGGCAATCTTCCAGACATTCTTGGAAATATTCTACCTGAGTTGCTGCTTTTAGTTGACATTGCCATCGTATTTAATAATGGACCCAG
ATGGCTAAGGAGCTCACTTTGGCTTCAGTTTAAGCCCCAGCAGATAGCTGCTGGAGCTGCATATCTGTCTGCCAAGCTAATGAATATGGACTTTGCTCCTTATCAAAATA
TCTTGCAAGAGTTCCAAGCAACGCCAGCCATTCTCCAAGATGTGGCCCAGCAGTTGATGGAGCTATTGTGA

mRNA sequence

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Protein sequence

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MSYDNDTIGNLPDILGNILPELLLLVDIAIVFNNGPRWLRSSLWLQFKPQQIAAGAAYLSAKLMNMDFAPYQNILQEFQATPAILQDVAQQLMELL

PI0027209 (gene) of Melon (PI 482460) v1 genome