CuGenDBv2

Gene ID	PI0027215
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty1-copia retrotransposon protein
Genome location	chr05:15350505..15350951
RNA-Seq Expression	PI0027215
Synteny	PI0027215
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036643.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

5.6e-50

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Query:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS
        Q+   FFEQLEVDY+LT D P    +S   TT S++S P SS GP T     DQ+K+   +DPEKYAK+NK +RGHLLNHMSDPMFDLFV QKSAK IWS
Subjt:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS

Query:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG
        TLESRYGGDDAG+KKYVVGKWLQ QMTDDKP+VE+IHEYENLVANVLSEG
Subjt:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG

KAA0054462.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

9.6e-50

72.48

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Query:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS
        Q+   FFEQLEVDY+LT D P    SS   TT S++S P SS GP T     DQ+K+   +DPEKYAK+NK +RGHLLNHMSDPMFDLFV QKSAK IWS
Subjt:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS

Query:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSE
        TLESRYGGDDAG+KKYVVGKWLQ QMTDDKP+VE+IHEYENLVANVLSE
Subjt:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSE

TYK04957.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

5.6e-50

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Query:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS
        Q+   FFEQLEVDY+LT D P    +S   TT S++S P SS GP T     DQ+K+   +DPEKYAK+NK +RGHLLNHMSDPMFDLFV QKSAK IWS
Subjt:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS

Query:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG
        TLESRYGGDDAG+KKYVVGKWLQ QMTDDKP+VE+IHEYENLVANVLSEG
Subjt:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG

TYK11996.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]

5.6e-50

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Query:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS
        Q+   FFEQLEVDY+LT D P    +S   TT S++S P SS GP T     DQ+K+   +DPEKYAK+NK +RGHLLNHMSDPMFDLFV QKSAK IWS
Subjt:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS

Query:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG
        TLESRYGGDDAG+KKYVVGKWLQ QMTDDKP+VE+IHEYENLVANVLSEG
Subjt:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG

XP_008456453.1 PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]

9.6e-50

72.48

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Query:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS
        Q+   FFEQLEVDY+LT D P    SS   TT S++S P SS GP T     DQ+K+   +DPEKYAK+NK +RGHLLNHMSDPMFDLFV QKSAK IWS
Subjt:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS

Query:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSE
        TLESRYGGDDAG+KKYVVGKWLQ QMTDDKP+VE+IHEYENLVANVLSE
Subjt:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C3Z1 uncharacterized protein LOC103496396

4.6e-50

72.48

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Query:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS
        Q+   FFEQLEVDY+LT D P    SS   TT S++S P SS GP T     DQ+K+   +DPEKYAK+NK +RGHLLNHMSDPMFDLFV QKSAK IWS
Subjt:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS

Query:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSE
        TLESRYGGDDAG+KKYVVGKWLQ QMTDDKP+VE+IHEYENLVANVLSE
Subjt:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSE

A0A5A7T166 Ty1-copia retrotransposon protein

2.7e-50

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Query:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS
        Q+   FFEQLEVDY+LT D P    +S   TT S++S P SS GP T     DQ+K+   +DPEKYAK+NK +RGHLLNHMSDPMFDLFV QKSAK IWS
Subjt:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS

Query:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG
        TLESRYGGDDAG+KKYVVGKWLQ QMTDDKP+VE+IHEYENLVANVLSEG
Subjt:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG

A0A5A7UFB4 Ty1-copia retrotransposon protein

4.6e-50

72.48

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Query:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS
        Q+   FFEQLEVDY+LT D P    SS   TT S++S P SS GP T     DQ+K+   +DPEKYAK+NK +RGHLLNHMSDPMFDLFV QKSAK IWS
Subjt:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS

Query:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSE
        TLESRYGGDDAG+KKYVVGKWLQ QMTDDKP+VE+IHEYENLVANVLSE
Subjt:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSE

A0A5D3BZH6 Ty1-copia retrotransposon protein

2.7e-50

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Query:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS
        Q+   FFEQLEVDY+LT D P    +S   TT S++S P SS GP T     DQ+K+   +DPEKYAK+NK +RGHLLNHMSDPMFDLFV QKSAK IWS
Subjt:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS

Query:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG
        TLESRYGGDDAG+KKYVVGKWLQ QMTDDKP+VE+IHEYENLVANVLSEG
Subjt:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG

A0A5D3CNJ2 Ty1-copia retrotransposon protein

2.7e-50

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Query:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS
        Q+   FFEQLEVDY+LT D P    +S   TT S++S P SS GP T     DQ+K+   +DPEKYAK+NK +RGHLLNHMSDPMFDLFV QKSAK IWS
Subjt:  QETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPT----VDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWS

Query:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG
        TLESRYGGDDAG+KKYVVGKWLQ QMTDDKP+VE+IHEYENLVANVLSEG
Subjt:  TLESRYGGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

1.3e-07

22.92

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Query:  FFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPTVDQLKQVPTVDP--EKYAKNNKIIRGHLLNHMSDPMFDLFVAQ-KSAKAIWSTLESRY
        F +QL++ Y+L+   PS   S    T P                  +++   D   +K+ +++ +   HL+N +SD ++  +  + K AK +W  L+  Y
Subjt:  FFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPTVDQLKQVPTVDP--EKYAKNNKIIRGHLLNHMSDPMFDLFVAQ-KSAKAIWSTLESRY

Query:  GGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG
          D++  K+  V K+++ +M +++PI+E++  +  +  +++S G
Subjt:  GGDDAGQKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG

Sequences

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CDS sequence

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ATGATCCAAGAAACTACTGATTTTTTCGAACAACTGGAAGTTGACTATTTGCTTACCATTGATCCTCCGTCTAATCCAGAATCATCCAGTACCAGCACCACACCATCATC
TACCTCTTATCCAAGATCATCCATGGGTCCTCCTACTGTTGACCAATTGAAGCAAGTACCTACAGTCGATCCTGAGAAATACGCAAAGAACAACAAGATAATTCGCGGGC
ATCTATTGAACCACATGTCAGATCCAATGTTCGATTTGTTCGTGGCCCAAAAATCTGCCAAGGCGATCTGGAGTACCTTGGAATCTCGATATGGTGGAGATGATGCAGGC
CAAAAAAAGTATGTCGTTGGAAAATGGCTACAACTTCAAATGACGGACGACAAACCTATTGTGGAGAAAATTCATGAATATGAAAATTTGGTGGCTAATGTTCTATCCGA
AGGATGA

mRNA sequence

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Protein sequence

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MIQETTDFFEQLEVDYLLTIDPPSNPESSSTSTTPSSTSYPRSSMGPPTVDQLKQVPTVDPEKYAKNNKIIRGHLLNHMSDPMFDLFVAQKSAKAIWSTLESRYGGDDAG
QKKYVVGKWLQLQMTDDKPIVEKIHEYENLVANVLSEG

PI0027215 (gene) of Melon (PI 482460) v1 genome