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PI0027227 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027227
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:18800840..18801363
RNA-Seq ExpressionPI0027227
SyntenyPI0027227
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035629.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-2138.73Show/hide
Query:  MCHVFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAMDF----
        + +VFGKDHA G  A  F D+ SN P G++ FPAD   DT  P  YS GL++              + +  SS SKRKR G   ++ +I+R A+++    
Subjt:  MCHVFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAMDF----

Query:  -------PNLQRQDECAARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN
               P LQRQD    R E+V QL+ IPKL+  DR RL            +FLEV + +K  YC++IL+EN
Subjt:  -------PNLQRQDECAARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-2139.88Show/hide
Query:  MCHVFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAMDFPN--
        + +VF KDHA G RA +F DV SN P G++ F A+  +DT+    YS+GL++              +G+  SS SK+KRGG  I++ +I+R A+++ N  
Subjt:  MCHVFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAMDFPN--

Query:  ---------LQRQDECAARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN
                 LQRQD    R EVV QL+ IP+L+  DR RL            +FLEVP+ +K  YC++ILEEN
Subjt:  ---------LQRQDECAARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-2749.04Show/hide
Query:  TFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAM-----------DFPNLQRQDEC
        TF DV SN P G+EGF AD GND EIPM YSQG+D+              +G+T SS SKRK+GGQ +ETMEIIRN M           ++ N+QRQD  
Subjt:  TFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAM-----------DFPNLQRQDEC

Query:  AARAEVVSQLQGIPKLSTHDRVR------------LSFLEVPNELKLDYCTVILEEN
        A   EVV QLQ IP+LS +DRVR             +FL++ +ELKLDYCT+I ++N
Subjt:  AARAEVVSQLQGIPKLSTHDRVR------------LSFLEVPNELKLDYCTVILEEN

KAA0065601.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-2953.85Show/hide
Query:  VFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDIKGKTDSSESKRKRGGQPIETMEIIRNAMDF-----------PNLQRQDECA
        +FGK  A  A   TFVDVRSNV   +EGFPA+ GND+EIPM Y  G   +G+  SS SKRK G Q  ET++II NA+++            N+QRQ + A
Subjt:  VFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDIKGKTDSSESKRKRGGQPIETMEIIRNAMDF-----------PNLQRQDECA

Query:  ARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN
        +RAEV+SQLQGIPKLST DRVRL            +FLEVP+ELKLDYCT +LE+N
Subjt:  ARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN

TYK07171.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-2953.85Show/hide
Query:  VFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDIKGKTDSSESKRKRGGQPIETMEIIRNAMDF-----------PNLQRQDECA
        +FGK  A  A   TFVDVRSNV   +EGFPA+ GND+EIPM Y  G   +G+  SS SKRK G Q  ET++II NA+++            N+QRQ + A
Subjt:  VFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDIKGKTDSSESKRKRGGQPIETMEIIRNAMDF-----------PNLQRQDECA

Query:  ARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN
        +RAEV+SQLQGIPKLST DRVRL            +FLEVP+ELKLDYCT +LE+N
Subjt:  ARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein6.5e-2239.88Show/hide
Query:  MCHVFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAMDFPN--
        + +VF KDHA G RA +F DV SN P G++ F A+  +DT+    YS+GL++              +G+  SS SK+KRGG  I++ +I+R A+++ N  
Subjt:  MCHVFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAMDFPN--

Query:  ---------LQRQDECAARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN
                 LQRQD    R EVV QL+ IP+L+  DR RL            +FLEVP+ +K  YC++ILEEN
Subjt:  ---------LQRQDECAARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN

A0A5A7V469 Retrotransposon protein1.3e-2749.04Show/hide
Query:  TFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAM-----------DFPNLQRQDEC
        TF DV SN P G+EGF AD GND EIPM YSQG+D+              +G+T SS SKRK+GGQ +ETMEIIRN M           ++ N+QRQD  
Subjt:  TFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAM-----------DFPNLQRQDEC

Query:  AARAEVVSQLQGIPKLSTHDRVR------------LSFLEVPNELKLDYCTVILEEN
        A   EVV QLQ IP+LS +DRVR             +FL++ +ELKLDYCT+I ++N
Subjt:  AARAEVVSQLQGIPKLSTHDRVR------------LSFLEVPNELKLDYCTVILEEN

A0A5A7VIQ2 Retrotransposon protein4.9e-3053.85Show/hide
Query:  VFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDIKGKTDSSESKRKRGGQPIETMEIIRNAMDF-----------PNLQRQDECA
        +FGK  A  A   TFVDVRSNV   +EGFPA+ GND+EIPM Y  G   +G+  SS SKRK G Q  ET++II NA+++            N+QRQ + A
Subjt:  VFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDIKGKTDSSESKRKRGGQPIETMEIIRNAMDF-----------PNLQRQDECA

Query:  ARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN
        +RAEV+SQLQGIPKLST DRVRL            +FLEVP+ELKLDYCT +LE+N
Subjt:  ARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN

A0A5D3C5I7 Retrotransposon protein1.1e-2953.85Show/hide
Query:  VFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDIKGKTDSSESKRKRGGQPIETMEIIRNAMDF-----------PNLQRQDECA
        +FGK  A  A   TFVDVRSNV   +EGFPA+ GND+EIPM Y  G   +G+  SS SKRK G Q  ET++II NA+++            N+QRQ + A
Subjt:  VFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDIKGKTDSSESKRKRGGQPIETMEIIRNAMDF-----------PNLQRQDECA

Query:  ARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN
        +RAEV+SQLQGIPKLST DRVRL            +FLEVP+ELKLDYCT +LE+N
Subjt:  ARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN

A0A5D3E474 Retrotransposon protein4.9e-2238.73Show/hide
Query:  MCHVFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAMDF----
        + +VFGKDHA G  A  F D+ SN P G++ FPAD   DT  P  YS GL++              + +  SS SKRKR G   ++ +I+R A+++    
Subjt:  MCHVFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDI--------------KGKTDSSESKRKRGGQPIETMEIIRNAMDF----

Query:  -------PNLQRQDECAARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN
               P LQRQD    R E+V QL+ IPKL+  DR RL            +FLEV + +K  YC++IL+EN
Subjt:  -------PNLQRQDECAARAEVVSQLQGIPKLSTHDRVRL------------SFLEVPNELKLDYCTVILEEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCCATGTATTTGGGAAAGATCATGCGATGGGAGCTCGTGCAAATACATTCGTTGATGTGAGGTCGAATGTGCCTGGAGGTTTCGAGGGATTTCCCGCTGATTATGG
GAACGACACGGAGATCCCTATGACATACAGTCAAGGACTAGACATTAAGGGTAAGACTGATTCAAGCGAATCGAAGAGGAAGCGGGGAGGCCAGCCGATAGAGACTATGG
AAATCATTCGGAATGCAATGGACTTCCCAAATTTACAACGTCAAGATGAATGTGCCGCTCGTGCAGAAGTCGTTAGCCAGTTGCAGGGGATCCCTAAACTGAGTACCCAT
GACAGGGTGCGCTTATCATTCTTGGAGGTACCCAATGAGCTTAAGTTGGACTACTGCACGGTCATTCTCGAAGAGAACGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCCATGTATTTGGGAAAGATCATGCGATGGGAGCTCGTGCAAATACATTCGTTGATGTGAGGTCGAATGTGCCTGGAGGTTTCGAGGGATTTCCCGCTGATTATGG
GAACGACACGGAGATCCCTATGACATACAGTCAAGGACTAGACATTAAGGGTAAGACTGATTCAAGCGAATCGAAGAGGAAGCGGGGAGGCCAGCCGATAGAGACTATGG
AAATCATTCGGAATGCAATGGACTTCCCAAATTTACAACGTCAAGATGAATGTGCCGCTCGTGCAGAAGTCGTTAGCCAGTTGCAGGGGATCCCTAAACTGAGTACCCAT
GACAGGGTGCGCTTATCATTCTTGGAGGTACCCAATGAGCTTAAGTTGGACTACTGCACGGTCATTCTCGAAGAGAACGTTTGA
Protein sequenceShow/hide protein sequence
MCHVFGKDHAMGARANTFVDVRSNVPGGFEGFPADYGNDTEIPMTYSQGLDIKGKTDSSESKRKRGGQPIETMEIIRNAMDFPNLQRQDECAARAEVVSQLQGIPKLSTH
DRVRLSFLEVPNELKLDYCTVILEENV