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PI0027231 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027231
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr07:10406815..10407378
RNA-Seq ExpressionPI0027231
SyntenyPI0027231
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]4.5e-4445.36Show/hide
Query:  RNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSKDF
        + + + F+ LK+K+WK + G K  L S  GK  L+K V+QAIPTY+MSCFR+P  +CK+LN   A+FWWA     R  HW+ W          G+G +D 
Subjt:  RNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSKDF

Query:  SLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP
          F+Q +LAKQCWR+ +  +SL+ R+ + RY     FL+A++G NPS+ WR++ WGK L  KG+RWRV NG  I +  DKW P
Subjt:  SLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP

XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]1.1e-5048.44Show/hide
Query:  MSSQMERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------G
        + SQ  RNK + F  +  +VW+ LQG K  L S GGK  L+K V QAIP Y+MSCFR P+++CK++N  YA+FWW S+   +K HW  W          G
Subjt:  MSSQMERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------G

Query:  MGSKDFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLKG
        +G KD  +F+Q MLAKQ W++ KN +SLL RVL+G+YF   +F+ A+LG NPS+ WR+I+WGK LF KG+RWR+ NG  ++I  D W   +G
Subjt:  MGSKDFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLKG

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]8.7e-4848.11Show/hide
Query:  MERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSK
        M RN+   F  +K++VWK LQG K+ L S+GGK  L+K V QAIP YTMSCFRLP  + ++ +   A+FWW S    +K HW+ W          GMG +
Subjt:  MERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSK

Query:  DFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP
        D  LF++ +LAKQCWR+  + +S+L RVLKGRYF   SF++A +  NPSY WR+I+WG+ L +KG+RWR+ NG+ + I  D W P
Subjt:  DFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]1.6e-4947.87Show/hide
Query:  MERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSK
        + +++ + F  + ++VWK LQG K  L S+GGK  L+K V QAIP YT+SCF+LP+S+C +L++ Y +FWW S    RK HW  W          GMG +
Subjt:  MERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSK

Query:  DFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLKG
        D S+F+Q MLAKQ WR+ ++ DSLL + L+G+YF   SFL+A LG  PSY WR+I+WG+ LF+KG RW+V NG  I +  D W P  G
Subjt:  DFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLKG

XP_030483669.1 uncharacterized protein LOC115700241 [Cannabis sativa]9.0e-4548.09Show/hide
Query:  RNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSKDF
        R+K K F  + +K+WKLL   K  L SVGGK  L+K VVQAIPTY MSCFRLP+++C  +    + FWW S       HW  W          G+G ++F
Subjt:  RNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSKDF

Query:  SLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP
         LF+Q +LAKQ WRL ++ +SLLGRVL  RYF   + L A LG  PS TWR+I+WGK L  +G++WRV  GE+I    D W P
Subjt:  SLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP

TrEMBL top hitse value%identityAlignment
A0A5E4FZN9 PREDICTED: retrotransposon2.2e-4445.36Show/hide
Query:  RNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSKDF
        + + + F+ LK+K+WK + G K  L S  GK  L+K V+QAIPTY+MSCFR+P  +CK+LN   A+FWWA     R  HW+ W          G+G +D 
Subjt:  RNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSKDF

Query:  SLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP
          F+Q +LAKQCWR+ +  +SL+ R+ + RY     FL+A++G NPS+ WR++ WGK L  KG+RWRV NG  I +  DKW P
Subjt:  SLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP

A0A6J1CV63 uncharacterized protein LOC1110146625.3e-5148.44Show/hide
Query:  MSSQMERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------G
        + SQ  RNK + F  +  +VW+ LQG K  L S GGK  L+K V QAIP Y+MSCFR P+++CK++N  YA+FWW S+   +K HW  W          G
Subjt:  MSSQMERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------G

Query:  MGSKDFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLKG
        +G KD  +F+Q MLAKQ W++ KN +SLL RVL+G+YF   +F+ A+LG NPS+ WR+I+WGK LF KG+RWR+ NG  ++I  D W   +G
Subjt:  MGSKDFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLKG

A0A6J1DAR4 uncharacterized protein LOC1110189544.2e-4848.11Show/hide
Query:  MERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSK
        M RN+   F  +K++VWK LQG K+ L S+GGK  L+K V QAIP YTMSCFRLP  + ++ +   A+FWW S    +K HW+ W          GMG +
Subjt:  MERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSK

Query:  DFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP
        D  LF++ +LAKQCWR+  + +S+L RVLKGRYF   SF++A +  NPSY WR+I+WG+ L +KG+RWR+ NG+ + I  D W P
Subjt:  DFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP

A0A6J1DRA0 uncharacterized protein LOC1110224237.7e-5047.87Show/hide
Query:  MERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSK
        + +++ + F  + ++VWK LQG K  L S+GGK  L+K V QAIP YT+SCF+LP+S+C +L++ Y +FWW S    RK HW  W          GMG +
Subjt:  MERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSK

Query:  DFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLKG
        D S+F+Q MLAKQ WR+ ++ DSLL + L+G+YF   SFL+A LG  PSY WR+I+WG+ LF+KG RW+V NG  I +  D W P  G
Subjt:  DFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLKG

A0A803QJN9 Uncharacterized protein4.3e-4548.09Show/hide
Query:  RNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSKDF
        R+K K F  + +K+WKLL   K  L SVGGK  L+K VVQAIPTY MSCFRLP+++C  +    + FWW S       HW  W          G+G ++F
Subjt:  RNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSKDF

Query:  SLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP
         LF+Q +LAKQ WRL ++ +SLLGRVL  RYF   + L A LG  PS TWR+I+WGK L  +G++WRV  GE+I    D W P
Subjt:  SLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFP

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003107.4e-2638.03Show/hide
Query:  AIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW-----------GMGSKDFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLK
        A+P Y MSCFRL   +CK L     +FWW+S    RK  W+ W           G+G +D   F+Q +LAKQ +R+     +LL R+L+ RYF  SS ++
Subjt:  AIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW-----------GMGSKDFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLK

Query:  ADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKW
          +G  PSY WR+II G+ L  +G+   + +G H  +  D+W
Subjt:  ADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKW

Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein6.3e-0435.85Show/hide
Query:  LKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDED
        +K RYF   S L A + +  SY W +++ G +L +KG R  + +G++I I  D
Subjt:  LKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDED

AT4G29090.1 Ribonuclease H-like superfamily protein4.3e-2940Show/hide
Query:  AIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSKDFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKA
        A+PTYTM+CF LP +VCK +    A FWW +    +  HW  W          G+G KD   F+  +L KQ WR+    +SL+ +V K RYF+KS  L A
Subjt:  AIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW----------GMGSKDFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLKA

Query:  DLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLK
         LG  PS+ W++I   + +  +G R  V NGE I+I   KW   K
Subjt:  DLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLK

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.3e-2738.03Show/hide
Query:  AIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW-----------GMGSKDFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLK
        A+P Y MSCFRL   +CK L     +FWW+S    RK  W+ W           G+G +D   F+Q +LAKQ +R+     +LL R+L+ RYF  SS ++
Subjt:  AIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIW-----------GMGSKDFSLFDQVMLAKQCWRLCKNQDSLLGRVLKGRYFNKSSFLK

Query:  ADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKW
          +G  PSY WR+II G+ L  +G+   + +G H  +  D+W
Subjt:  ADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTCAGATGGAAAGAAATAAAGATAAATGCTTTAGAAGGCTTAAAGAGAAAGTTTGGAAGCTCCTGCAAGGTTCCAAAAGTAATCTTTCTTCCGTTGGAGGAAA
GAGATTCCTTGTTAAAGTTGTGGTGCAAGCGATTCCCACCTATACAATGAGTTGTTTTAGACTACCTATTTCAGTTTGTAAAGACCTTAATAAATGTTATGCTCAATTTT
GGTGGGCATCTGACTTAGGGGTTAGGAAGACTCATTGGCTGATTTGGGGTATGGGGTCCAAGGATTTCTCCTTGTTCGATCAGGTGATGTTAGCAAAGCAGTGTTGGCGA
CTCTGTAAAAATCAAGATAGCCTTCTTGGGAGAGTTTTGAAAGGTAGATACTTTAATAAGAGTTCGTTTCTAAAAGCTGATCTTGGCAGAAATCCTTCCTATACGTGGAG
AAACATCATTTGGGGAAAGAGCCTATTTGAGAAGGGAGTTAGATGGAGAGTGGAAAATGGGGAACATATTGTCATTGATGAGGACAAGTGGTTTCCCTTGAAGGGGGTTG
GTAGGCATGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTCAGATGGAAAGAAATAAAGATAAATGCTTTAGAAGGCTTAAAGAGAAAGTTTGGAAGCTCCTGCAAGGTTCCAAAAGTAATCTTTCTTCCGTTGGAGGAAA
GAGATTCCTTGTTAAAGTTGTGGTGCAAGCGATTCCCACCTATACAATGAGTTGTTTTAGACTACCTATTTCAGTTTGTAAAGACCTTAATAAATGTTATGCTCAATTTT
GGTGGGCATCTGACTTAGGGGTTAGGAAGACTCATTGGCTGATTTGGGGTATGGGGTCCAAGGATTTCTCCTTGTTCGATCAGGTGATGTTAGCAAAGCAGTGTTGGCGA
CTCTGTAAAAATCAAGATAGCCTTCTTGGGAGAGTTTTGAAAGGTAGATACTTTAATAAGAGTTCGTTTCTAAAAGCTGATCTTGGCAGAAATCCTTCCTATACGTGGAG
AAACATCATTTGGGGAAAGAGCCTATTTGAGAAGGGAGTTAGATGGAGAGTGGAAAATGGGGAACATATTGTCATTGATGAGGACAAGTGGTTTCCCTTGAAGGGGGTTG
GTAGGCATGTGTGA
Protein sequenceShow/hide protein sequence
MSSQMERNKDKCFRRLKEKVWKLLQGSKSNLSSVGGKRFLVKVVVQAIPTYTMSCFRLPISVCKDLNKCYAQFWWASDLGVRKTHWLIWGMGSKDFSLFDQVMLAKQCWR
LCKNQDSLLGRVLKGRYFNKSSFLKADLGRNPSYTWRNIIWGKSLFEKGVRWRVENGEHIVIDEDKWFPLKGVGRHV