; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027256 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027256
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLSD1 zinc finger family protein
Genome locationchr06:29550026..29553191
RNA-Seq ExpressionPI0027256
SyntenyPI0027256
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650032.1 hypothetical protein Csa_010851 [Cucumis sativus]9.8e-6496Show/hide
Query:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM
        MPFPPVTCCQNQIMCSGCK LLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGA SVQCSCCRT+NAAS+ANQMAHINCGNCRVLLM
Subjt:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM

Query:  YQCEAHSVKCTLCNFVTSVGILRSN
        YQCEAHSVKCTLCNFVTSVGILR N
Subjt:  YQCEAHSVKCTLCNFVTSVGILRSN

XP_008448702.2 PREDICTED: protein LSD1 isoform X2 [Cucumis melo]6.6e-6086.76Show/hide
Query:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASK-------------ANQM
        MPFP VTCCQNQIMCSGCK +LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRT+NAASK             ANQM
Subjt:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASK-------------ANQM

Query:  AHINCGNCRVLLMYQCEAHSVKCTLCNFVTSVGILR
        AH NCGNCRVLLMYQCEAHSVKCTLCNFVTSVGILR
Subjt:  AHINCGNCRVLLMYQCEAHSVKCTLCNFVTSVGILR

XP_008448703.1 PREDICTED: protein LOL1 isoform X1 [Cucumis melo]1.1e-6295.93Show/hide
Query:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM
        MPFP VTCCQNQIMCSGCK +LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRT+NAASKANQMAH NCGNCRVLLM
Subjt:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM

Query:  YQCEAHSVKCTLCNFVTSVGILR
        YQCEAHSVKCTLCNFVTSVGILR
Subjt:  YQCEAHSVKCTLCNFVTSVGILR

XP_031738784.1 protein LSD1 [Cucumis sativus]9.8e-6496Show/hide
Query:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM
        MPFPPVTCCQNQIMCSGCK LLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGA SVQCSCCRT+NAAS+ANQMAHINCGNCRVLLM
Subjt:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM

Query:  YQCEAHSVKCTLCNFVTSVGILRSN
        YQCEAHSVKCTLCNFVTSVGILR N
Subjt:  YQCEAHSVKCTLCNFVTSVGILRSN

XP_038903355.1 protein LSD1-like [Benincasa hispida]1.5e-5690.08Show/hide
Query:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM
        MPFPPVTCC+N I+CSGCK LLIYPAGAT ICCALCH V+PVPTSGLTMARLVCSGC+TLLMYSRGATSVQCSCCRTVNAAS+ANQMAHINCGNCRV+LM
Subjt:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM

Query:  YQCEAHSVKCTLCNFVTSVGI
        YQ  AHSVKCTLCNFVTSVGI
Subjt:  YQCEAHSVKCTLCNFVTSVGI

TrEMBL top hitse value%identityAlignment
A0A059CIG5 Uncharacterized protein3.9e-4271.79Show/hide
Query:  PPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQC
        PPV   Q+Q++CSGC+ LL+YPAGATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RGATSVQCSCC TVN A +ANQ+AH+NCGNCR+LLMYQ 
Subjt:  PPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQC

Query:  EAHSVKCTLCNFVTSVG
         A SVKC +CNFVTSVG
Subjt:  EAHSVKCTLCNFVTSVG

A0A1S3BJQ2 protein LSD1 isoform X23.2e-6086.76Show/hide
Query:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASK-------------ANQM
        MPFP VTCCQNQIMCSGCK +LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRT+NAASK             ANQM
Subjt:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASK-------------ANQM

Query:  AHINCGNCRVLLMYQCEAHSVKCTLCNFVTSVGILR
        AH NCGNCRVLLMYQCEAHSVKCTLCNFVTSVGILR
Subjt:  AHINCGNCRVLLMYQCEAHSVKCTLCNFVTSVGILR

A0A1S3BKC0 protein LOL1 isoform X15.3e-6395.93Show/hide
Query:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM
        MPFP VTCCQNQIMCSGCK +LIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRT+NAASKANQMAH NCGNCRVLLM
Subjt:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM

Query:  YQCEAHSVKCTLCNFVTSVGILR
        YQCEAHSVKCTLCNFVTSVGILR
Subjt:  YQCEAHSVKCTLCNFVTSVGILR

A0A498JSX6 Uncharacterized protein3.9e-4268.03Show/hide
Query:  PPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQC
        PP    Q+Q++CSGC+ LL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RGATSVQCSCC TVN A +ANQ+AH+NCGNCR+LLMYQ 
Subjt:  PPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQC

Query:  EAHSVKCTLCNFVTSVGILRSN
         A SVKC +CNFVTSVG+  +N
Subjt:  EAHSVKCTLCNFVTSVGILRSN

A0A6J1CWA3 protein LSD1-like7.9e-5180Show/hide
Query:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM
        MP PPVTCCQ++++CSGCK LLIYP GATSICC LCH+V+PVPT GL MARLVC GC+TLL++SRGATSVQCSCCRTVN+ASKANQ A INC NCR+LLM
Subjt:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM

Query:  YQCEAHSVKCTLCNFVTSVG
        YQC AHSV+CTLCNFVT VG
Subjt:  YQCEAHSVKCTLCNFVTSVG

SwissProt top hitse value%identityAlignment
P94077 Protein LSD11.0e-2647.97Show/hide
Query:  QNQIMCSGCKKLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVN---------AASKANQMAHINCGNCRVL
        Q+Q++C GC+ LL+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RGA+SV+CSCC+T N         A + ++Q+A INCG+CR  
Subjt:  QNQIMCSGCKKLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVN---------AASKANQMAHINCGNCRVL

Query:  LMYQCEAHSVKCTLCNFVTSVGI
        LMY   A SVKC +C FVT+V +
Subjt:  LMYQCEAHSVKCTLCNFVTSVGI

Q0J7V9 Protein LSD13.1e-4469.17Show/hide
Query:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM
        +PF P    Q+Q++CSGC+ LL+YPAGATS+CCA+C  VT VP  G  MA+LVC GC+TLLMY RGATSVQCSCC TVN A +ANQ+AH+NCGNCR+LLM
Subjt:  MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLM

Query:  YQCEAHSVKCTLCNFVTSVG
        YQ  A SVKC +CNFVTSVG
Subjt:  YQCEAHSVKCTLCNFVTSVG

Q2QMB3 Protein LOL29.3e-3354.87Show/hide
Query:  QNQIMCSGCKKLLIYPAGATSICCALCHAV-TPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAHSV
        Q+QI+C GC+ +L+YP GA S+CCA+CHAV +  P+ G+ +A L+C GC TLLMY+R ATSV+CSCC TVN     + +AH+NCG C+ +LMY   A SV
Subjt:  QNQIMCSGCKKLLIYPAGATSICCALCHAV-TPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAHSV

Query:  KCTLCNFVTSVGI
        KC +CNF+T+ G+
Subjt:  KCTLCNFVTSVGI

Q6ASS2 Protein LOL31.9e-3052.63Show/hide
Query:  QNQIMCSGCKKLLIYPAGATSICCALCHAVT--PVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAHS
        Q+QI+C GC+ +L YP+GA S+CCALC A+T  P P   + MA L+C GC TLLMY+R A +V+CSCC TVN     N +AH++CG CR  LMY   A S
Subjt:  QNQIMCSGCKKLLIYPAGATSICCALCHAVT--PVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAHS

Query:  VKCTLCNFVTSVGI
        VKC +C+++T+ G+
Subjt:  VKCTLCNFVTSVGI

Q93ZB1 Protein LOL16.5e-4270.18Show/hide
Query:  TCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAH
        T  Q+Q++CSGC+ LL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RGATSVQCSCC TVN A +ANQ+AH+NCGNC +LLMYQ  A 
Subjt:  TCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAH

Query:  SVKCTLCNFVTSVG
        SVKC +CNFVTSVG
Subjt:  SVKCTLCNFVTSVG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 14.6e-4370.18Show/hide
Query:  TCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAH
        T  Q+Q++CSGC+ LL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RGATSVQCSCC TVN A +ANQ+AH+NCGNC +LLMYQ  A 
Subjt:  TCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAH

Query:  SVKCTLCNFVTSVG
        SVKC +CNFVTSVG
Subjt:  SVKCTLCNFVTSVG

AT1G32540.2 lsd one like 14.6e-4370.18Show/hide
Query:  TCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAH
        T  Q+Q++CSGC+ LL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RGATSVQCSCC TVN A +ANQ+AH+NCGNC +LLMYQ  A 
Subjt:  TCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAH

Query:  SVKCTLCNFVTSVG
        SVKC +CNFVTSVG
Subjt:  SVKCTLCNFVTSVG

AT1G32540.3 lsd one like 14.6e-4370.18Show/hide
Query:  TCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAH
        T  Q+Q++CSGC+ LL+YP GATS+CCA+C+AVT VP  G  MA+LVC GC+TLLMY RGATSVQCSCC TVN A +ANQ+AH+NCGNC +LLMYQ  A 
Subjt:  TCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAH

Query:  SVKCTLCNFVTSVG
        SVKC +CNFVTSVG
Subjt:  SVKCTLCNFVTSVG

AT4G20380.1 LSD1 zinc finger family protein7.1e-2847.97Show/hide
Query:  QNQIMCSGCKKLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVN---------AASKANQMAHINCGNCRVL
        Q+Q++C GC+ LL+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RGA+SV+CSCC+T N         A + ++Q+A INCG+CR  
Subjt:  QNQIMCSGCKKLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVN---------AASKANQMAHINCGNCRVL

Query:  LMYQCEAHSVKCTLCNFVTSVGI
        LMY   A SVKC +C FVT+V +
Subjt:  LMYQCEAHSVKCTLCNFVTSVGI

AT4G20380.2 LSD1 zinc finger family protein7.1e-2847.97Show/hide
Query:  QNQIMCSGCKKLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVN---------AASKANQMAHINCGNCRVL
        Q+Q++C GC+ LL+YP GA+++ CALC+ +   P P     MA ++C GC T+LMY+RGA+SV+CSCC+T N         A + ++Q+A INCG+CR  
Subjt:  QNQIMCSGCKKLLIYPAGATSICCALCHAV--TPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVN---------AASKANQMAHINCGNCRVL

Query:  LMYQCEAHSVKCTLCNFVTSVGI
        LMY   A SVKC +C FVT+V +
Subjt:  LMYQCEAHSVKCTLCNFVTSVGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTTCCACCAGTTACTTGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAAGCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCA
TGCTGTAACTCCTGTTCCAACCTCTGGCTTAACGATGGCTCGGCTGGTGTGCAGTGGCTGCTACACCCTGCTCATGTACAGTCGTGGGGCGACAAGTGTACAATGTTCTT
GTTGTCGCACCGTGAATGCAGCTTCTAAAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGT
ACACTTTGCAATTTTGTCACCTCAGTTGGGATTTTGAGGTCTAATTAG
mRNA sequenceShow/hide mRNA sequence
GTGAAATTTAAACGTTACAAATTATAGGCAAAATTTAGATCCATTTGAAAGGTGAAATATAAATATGTGGACTATCTTGTTAGTTCATTAACAAAGAAGAAGGCACATTA
TTATTATTTTTCTTTCTCCTTTTTCCTCCTACAATTCGCATGTTTATCAGTGTCAACTTTTTTGGAAGGAGGGATTTTCCTTTCCAAAGTGGTTCGAAAGTCGAAGTCGA
AGTCTTAACTCCTAAAAACCTACATTTACTGCAACCTGAAAAGAGATGGTAGGTACGAAGACAAAGCACGGTGTTGTCTTTGCCTGAGAAACCGAGTGTTGAAGAAATTC
AGCTGAAAAGAAGTTTCTTCAACATCACAAAAATGCCGTTTCCACCAGTTACTTGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAAGCTGTTGATCTATCCTGCT
GGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGCTTAACGATGGCTCGGCTGGTGTGCAGTGGCTGCTACACCCTGCTCATGTA
CAGTCGTGGGGCGACAAGTGTACAATGTTCTTGTTGTCGCACCGTGAATGCAGCTTCTAAAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGAGTGCTGCTGA
TGTACCAATGTGAAGCACATTCTGTTAAATGTACACTTTGCAATTTTGTCACCTCAGTTGGGATTTTGAGGTCTAATTAGTTCATAATTTCCCCCTTTTGTTTTTCCTTC
TCAAACTTCACAGCACTTGGATCAATAAAGATGAACTCTAAAAATCACAAACCTTCTATAATGGTTTGTAATGAAAAATGTTTTTTCTTTAAAAAAATTAGGATAAGGAG
TGCTTTCTAGGTTAGGAGATTGAATGAGAGAATACATATCAATTACAGAAAACCTAAG
Protein sequenceShow/hide protein sequence
MPFPPVTCCQNQIMCSGCKKLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGATSVQCSCCRTVNAASKANQMAHINCGNCRVLLMYQCEAHSVKC
TLCNFVTSVGILRSN