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PI0027263 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027263
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:12270227..12271816
RNA-Seq ExpressionPI0027263
SyntenyPI0027263
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.0e-5773.89Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT
        MLNMTTLLTSFVQG  +KV  CGVC LVGHPNDKCP++IE+  ++R YDP+ NTYN+GWRDN NLRWGNDNQ+ +QA     +SSNQGTNLED++KALAT
Subjt:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT

Query:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
        NTL FQQEMKQQ++ LT+AISK++GKGKLPAQP YANVSAISLRSGKIL+T  +KEK
Subjt:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.0e-5873.89Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT
        MLNMTTLLTSFVQG  +KV  CGVCGLVGHPNDKCP++IE+  ++R YDPH NTYN+GWRDN NLRWGNDNQ+ +QA    S+SSNQGTNLED++KALAT
Subjt:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT

Query:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
        NTL FQQEMKQQ++ LT+AISK++GKGKL AQ  YANVSA+SLRSGKIL+T  +KEK
Subjt:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.0e-5874.84Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT
        MLNMTTLLTSFVQG   KV  CGVCGLVGHPNDKC  +IE+  ++R YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA    S+SSNQGTNLED++KAL T
Subjt:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT

Query:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEKPK
        NTL FQQEMKQQ++ LT+AISK++GKGKLPAQP YANVSAISLRSGKIL+T  +KEK K
Subjt:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEKPK
TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.0e-5875.16Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT
        MLNMTTLLTSFVQG   KV  CGVCGLVGHPNDKCP +IE+  ++R YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA    S+SSNQGTNLED++KALAT
Subjt:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT

Query:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
        NTL FQQ+MKQQ++ LT+AISK++GKGKLPAQP +ANVSAISLRSGKIL+T  +KEK
Subjt:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-5673.25Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT
        MLNMTTLLTSFVQG   KV  CGVCGLVGHPNDKCP++IE+  ++R YDPH NTYN GWRD  NLRWGND Q  +QA    S+SSNQGTNLED++KAL T
Subjt:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT

Query:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
        NTL FQQEMKQQ++ LT+AISK++GKGKLPAQP +ANVSAISLRSGKIL+T  +KEK
Subjt:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein2.0e-5874.84Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT
        MLNMTTLLTSFVQG   KV  CGVCGLVGHPNDKC  +IE+  ++R YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA    S+SSNQGTNLED++KAL T
Subjt:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT

Query:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEKPK
        NTL FQQEMKQQ++ LT+AISK++GKGKLPAQP YANVSAISLRSGKIL+T  +KEK K
Subjt:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEKPK
A0A5D3CB46 Retrotransposon gag protein2.0e-5875.16Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT
        MLNMTTLLTSFVQG   KV  CGVCGLVGHPNDKCP +IE+  ++R YDPHSNTYN+GWRDN NLRWGNDNQ+ +QA    S+SSNQGTNLED++KALAT
Subjt:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT

Query:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
        NTL FQQ+MKQQ++ LT+AISK++GKGKLPAQP +ANVSAISLRSGKIL+T  +KEK
Subjt:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
A0A5D3CFE7 Retrotransposon gag protein1.1e-5673.25Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT
        MLNMTTLLTSFVQG   KV  CGVCGLVGHPNDKCP++IE+  ++R YDPH NTYN GWRD  NLRWGND Q  +QA    S+SSNQGTNLED++KAL T
Subjt:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT

Query:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
        NTL FQQEMKQQ++ LT+AISK++GKGKLPAQP +ANVSAISLRSGKIL+T  +KEK
Subjt:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
A0A5D3CRR8 Retrotransposon gag protein4.4e-5873.89Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT
        MLNMTTLLTSFVQG  +KV  CGVCGLVGHPNDKCP++IE+  ++R YDPH NTYN+GWRDN NLRWGNDNQ+ +QA    S+SSNQGTNLED++KALAT
Subjt:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT

Query:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
        NTL FQQEMKQQ++ LT+AISK++GKGKL AQ  YANVSA+SLRSGKIL+T  +KEK
Subjt:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
E5GBZ4 Retrotransposon gag protein9.7e-5873.89Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT
        MLNMTTLLTSFVQG  +KV  CGVC LVGHPNDKCP++IE+  ++R YDP+ NTYN+GWRDN NLRWGNDNQ+ +QA     +SSNQGTNLED++KALAT
Subjt:  MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALAT

Query:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
        NTL FQQEMKQQ++ LT+AISK++GKGKLPAQP YANVSAISLRSGKIL+T  +KEK
Subjt:  NTLFFQQEMKQQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTTTACTAACTTCTTTTGTGCAAGGTGGATCTGTTAAAGTTGCTATATGCGGGGTGTGCGGTCTAGTCGGACATCCCAATGACAAGTGCCCTGA
CTTAATAGAAGAGGCAAAAGTCATTCGTAATTACGATCCCCATAGTAATACTTACAATGCCGGTTGGAGAGACAACCAAAATCTAAGGTGGGGAAACGACAACCAAAGAC
CTTCACAAGCAGCTTCTTCTTCTTCTTCTTCCTCTAATCAAGGTACCAATTTGGAAGATCTAGTAAAAGCTCTAGCAACTAATACCCTCTTTTTCCAACAAGAAATGAAG
CAACAAATTTCTCATCTCACAAGCGCAATTAGCAAATTAGAAGGAAAAGGCAAACTTCCGGCCCAACCGTACTATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAA
AATTCTGGAAACCGCTCCAAGTAAAGAAAAGCCAAAGCACAAGCAAGCAAAGACAAGAACAATAAAGATGAATGGAGGAATCAAACCCAAGATCATAGATCCGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTTTACTAACTTCTTTTGTGCAAGGTGGATCTGTTAAAGTTGCTATATGCGGGGTGTGCGGTCTAGTCGGACATCCCAATGACAAGTGCCCTGA
CTTAATAGAAGAGGCAAAAGTCATTCGTAATTACGATCCCCATAGTAATACTTACAATGCCGGTTGGAGAGACAACCAAAATCTAAGGTGGGGAAACGACAACCAAAGAC
CTTCACAAGCAGCTTCTTCTTCTTCTTCTTCCTCTAATCAAGGTACCAATTTGGAAGATCTAGTAAAAGCTCTAGCAACTAATACCCTCTTTTTCCAACAAGAAATGAAG
CAACAAATTTCTCATCTCACAAGCGCAATTAGCAAATTAGAAGGAAAAGGCAAACTTCCGGCCCAACCGTACTATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAA
AATTCTGGAAACCGCTCCAAGTAAAGAAAAGCCAAAGCACAAGCAAGCAAAGACAAGAACAATAAAGATGAATGGAGGAATCAAACCCAAGATCATAGATCCGGGTTGA
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGSVKVAICGVCGLVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNQNLRWGNDNQRPSQAASSSSSSSNQGTNLEDLVKALATNTLFFQQEMK
QQISHLTSAISKLEGKGKLPAQPYYANVSAISLRSGKILETAPSKEKPKHKQAKTRTIKMNGGIKPKIIDPG