CuGenDBv2

Gene ID	PI0027270
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Genome location	chr10:5874225..5874476
RNA-Seq Expression	PI0027270
Synteny	PI0027270
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0110165 - cellular anatomical structure (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004197 - cysteine-type endopeptidase activity (molecular function) GO:0008445 - D-aspartate oxidase activity (molecular function)
InterPro domains	IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KYP55026.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]

1.4e-25

69.88

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGLCNAPGTFQRCM+SIFSDF+E            YG +FDACLNSL+ +LNRCIE+NLVLN+EKCHFMV  GIVLGH++S
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

KYP71307.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cajanus cajan]

4.8e-26

69.88

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGLCNAPGTFQRCM+SIFSD++E            YG +FDACL+SL+ +LNRCIE+NLVLN+EKCHFMV HGIVLGHL+S
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

RZB41284.1 Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]

2.4e-25

69.88

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGLCNAPGTFQRCM+SIFSDF+E            YG +FD CLNSLE +LNRCIE+NLVLN+EKCHFMV  GIVLGH++S
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

RZC25552.1 Transposon Ty3-G Gag-Pol polyprotein [Glycine soja]

2.4e-25

69.88

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGLCNAPGTFQRCM+SIFSDF+E            YG +FD CLNSLE +LNRCIE+NLVLN+EKCHFMV  GIVLGH++S
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

XP_028223537.1 uncharacterized protein LOC114405046 [Glycine soja]

2.4e-25

69.88

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGLCNAPGTFQRCM+SIFSDF+E            YG +FD CLNSLE +LNRCIE+NLVLN+EKCHFMV  GIVLGH++S
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

TrEMBL top hits

e value

%identity

Alignment

A0A151SJM9 Retrovirus-related Pol polyprotein from transposon 17.6

6.7e-26

69.88

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGLCNAPGTFQRCM+SIFSDF+E            YG +FDACLNSL+ +LNRCIE+NLVLN+EKCHFMV  GIVLGH++S
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

A0A151TW73 Retrovirus-related Pol polyprotein from transposon 17.6

2.3e-26

69.88

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGLCNAPGTFQRCM+SIFSD++E            YG +FDACL+SL+ +LNRCIE+NLVLN+EKCHFMV HGIVLGHL+S
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

A0A445EY74 Reverse transcriptase

1.1e-25

69.88

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGLCNAPGTFQRCM+SIFSDF+E            YG +FD CLNSLE +LNRCIE+NLVLN+EKCHFMV  GIVLGH++S
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

A0A445FCZ8 Reverse transcriptase

1.5e-25

69.88

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGLCNAPGTFQRCM+SIFSDF+E            YG +FD CLNSLE +LNRCIE+NLVLN+EKCHFMV  GIVLGH++S
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

A0A445LR48 Transposon Ty3-G Gag-Pol polyprotein

1.1e-25

69.88

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGLCNAPGTFQRCM+SIFSDF+E            YG +FD CLNSLE +LNRCIE+NLVLN+EKCHFMV  GIVLGH++S
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.4e-07

36.14

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGL NAP TFQRCM  I    + K           +  + D  L SL L+  +  ++NL L  +KC F+      LGH+++
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

P20825 Retrovirus-related Pol polyprotein from transposon 297

1.6e-08

36.14

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        MPFGL NAP TFQRCM +I    + K           +  +    LNS++L+  +  ++NL L  +KC F+      LGH+V+
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

2.4e-04

31.33

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Query:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS
        +PFGL NAP  FQR +  I  + + K           + +++D    +L L+L    ++NL +N EK HF+ +    LG++V+
Subjt:  MPFGLCNAPGTFQRCMMSIFSDFMEK----------FYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCTTTTGGTTTATGTAATGCACCTGGCACATTCCAACGTTGTATGATGAGCATCTTTTCTGATTTTATGGAAAAATTTTATGGTGATAACTTTGATGCATGCTTAAA
TAGTCTTGAACTTATTCTAAATAGATGCATAGAATCCAACCTTGTGTTGAATTATGAAAAATGTCATTTCATGGTCTCACATGGCATAGTTCTAGGCCATTTAGTGTCTT
AA

mRNA sequence

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Protein sequence

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MPFGLCNAPGTFQRCMMSIFSDFMEKFYGDNFDACLNSLELILNRCIESNLVLNYEKCHFMVSHGIVLGHLVS

PI0027270 (gene) of Melon (PI 482460) v1 genome