; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027274 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027274
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionWD repeat-containing protein 11 isoform X1
Genome locationchr10:223449..224578
RNA-Seq ExpressionPI0027274
SyntenyPI0027274
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032085.1 ACT11D09.5 [Cucumis melo var. makuwa]2.4e-0642.86Show/hide
Query:  PKKVRFFIWQVLLGWVNIVDS------LIRRTSLV----------GLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLP
        P K   F+W    G++    S      L+R T L+          GLFVACFV R R+TLIIFFGI ++ G C    C+S VLAMLAIG + +  G  L 
Subjt:  PKKVRFFIWQVLLGWVNIVDS------LIRRTSLV----------GLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLP

Query:  SFFKE
          FKE
Subjt:  SFFKE

KAA0050141.1 WD repeat-containing protein 11 isoform X1 [Cucumis melo var. makuwa]8.4e-0749.44Show/hide
Query:  VPKKVRFFIWQVLLGWVNIVDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLPSFFK
        VPKKV+FFI+QVLLG V  VD L+RRTSLV  F      + RK LII  GI S      A   +SS LA+L      D +G+P PS F+
Subjt:  VPKKVRFFIWQVLLGWVNIVDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLPSFFK

KAA0054681.1 retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]1.6e-1061.43Show/hide
Query:  KVPKKVRFFIWQVLLGWVNI-VDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVL
        KVPKKVRFFIWQVLLG VN+ +  L R   L  +FVACFV RWRK LIIF+G  ++ G C A  CKS +L
Subjt:  KVPKKVRFFIWQVLLGWVNI-VDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVL

TYK06396.1 WD repeat-containing protein 11 isoform X1 [Cucumis melo var. makuwa]8.4e-0749.44Show/hide
Query:  VPKKVRFFIWQVLLGWVNIVDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLPSFFK
        VPKKV+FFI+QVLLG V  VD L+RRTSLV  F      + RK LII  GI S      A   +SS LA+L      D +G+P PS F+
Subjt:  VPKKVRFFIWQVLLGWVNIVDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLPSFFK

TYK08591.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-1061.43Show/hide
Query:  KVPKKVRFFIWQVLLGWVNI-VDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVL
        KVPKKVRFFIWQVLLG VN+ +  L R   L  +FVACFV RWRK LIIF+G  ++ G C A  CKS +L
Subjt:  KVPKKVRFFIWQVLLGWVNI-VDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVL

TrEMBL top hitse value%identityAlignment
A0A5A7SSD1 ACT11D09.51.2e-0642.86Show/hide
Query:  PKKVRFFIWQVLLGWVNIVDS------LIRRTSLV----------GLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLP
        P K   F+W    G++    S      L+R T L+          GLFVACFV R R+TLIIFFGI ++ G C    C+S VLAMLAIG + +  G  L 
Subjt:  PKKVRFFIWQVLLGWVNIVDS------LIRRTSLV----------GLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLP

Query:  SFFKE
          FKE
Subjt:  SFFKE

A0A5A7U9D7 WD repeat-containing protein 11 isoform X14.1e-0749.44Show/hide
Query:  VPKKVRFFIWQVLLGWVNIVDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLPSFFK
        VPKKV+FFI+QVLLG V  VD L+RRTSLV  F      + RK LII  GI S      A   +SS LA+L      D +G+P PS F+
Subjt:  VPKKVRFFIWQVLLGWVNIVDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLPSFFK

A0A5A7UMB2 Retrotransposon protein, putative, unclassified7.9e-1161.43Show/hide
Query:  KVPKKVRFFIWQVLLGWVNI-VDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVL
        KVPKKVRFFIWQVLLG VN+ +  L R   L  +FVACFV RWRK LIIF+G  ++ G C A  CKS +L
Subjt:  KVPKKVRFFIWQVLLGWVNI-VDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVL

A0A5D3C7U0 WD repeat-containing protein 11 isoform X14.1e-0749.44Show/hide
Query:  VPKKVRFFIWQVLLGWVNIVDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLPSFFK
        VPKKV+FFI+QVLLG V  VD L+RRTSLV  F      + RK LII  GI S      A   +SS LA+L      D +G+P PS F+
Subjt:  VPKKVRFFIWQVLLGWVNIVDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLPSFFK

A0A5D3C9P5 Ty3/gypsy retrotransposon protein7.9e-1161.43Show/hide
Query:  KVPKKVRFFIWQVLLGWVNI-VDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVL
        KVPKKVRFFIWQVLLG VN+ +  L R   L  +FVACFV RWRK LIIF+G  ++ G C A  CKS +L
Subjt:  KVPKKVRFFIWQVLLGWVNI-VDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTTTGGAGGACCAAAGGTTCCTAAGAAAGTTAGGTTTTTCATCTGGCAAGTTTTGCTTGGTTGGGTTAACATTGTTGATAGCCTTATTAGGAGGACTTCACTTGT
AGGCCTTTTTGTTGCATGCTTTGTCATAAGGTGGAGGAAGACTTTGATCATCTTTTTTGGGATTGTCAGTATACGCGGGTTGTGTAGAGCTGGTTTCTGCAAGAGTTCGG
TGTTAGCCATGCTGGCCATTGGGCGTTCATGTGATGATCAAGGAATTCCTCTTCCATCTTTCTTCAAAGAATGGCCCAATAAACCCTTGAAGTTTCCTTCAGTCATGGTC
AAAGAGACTATGCATTTGTTGAGTTTAGTGATCCCAGTGATGCTGATGATGCAAGATATAAGTTTAAATGGGCAGGATGTCCATGGAAGTCGAATCATTATGGAAATAGC
TAAAGGCTTGATGGTTGTTTTCGATTCCTTTTTCCAATGTTTACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTTTGGAGGACCAAAGGTTCCTAAGAAAGTTAGGTTTTTCATCTGGCAAGTTTTGCTTGGTTGGGTTAACATTGTTGATAGCCTTATTAGGAGGACTTCACTTGT
AGGCCTTTTTGTTGCATGCTTTGTCATAAGGTGGAGGAAGACTTTGATCATCTTTTTTGGGATTGTCAGTATACGCGGGTTGTGTAGAGCTGGTTTCTGCAAGAGTTCGG
TGTTAGCCATGCTGGCCATTGGGCGTTCATGTGATGATCAAGGAATTCCTCTTCCATCTTTCTTCAAAGAATGGCCCAATAAACCCTTGAAGTTTCCTTCAGTCATGGTC
AAAGAGACTATGCATTTGTTGAGTTTAGTGATCCCAGTGATGCTGATGATGCAAGATATAAGTTTAAATGGGCAGGATGTCCATGGAAGTCGAATCATTATGGAAATAGC
TAAAGGCTTGATGGTTGTTTTCGATTCCTTTTTCCAATGTTTACTTTGA
Protein sequenceShow/hide protein sequence
MWFGGPKVPKKVRFFIWQVLLGWVNIVDSLIRRTSLVGLFVACFVIRWRKTLIIFFGIVSIRGLCRAGFCKSSVLAMLAIGRSCDDQGIPLPSFFKEWPNKPLKFPSVMV
KETMHLLSLVIPVMLMMQDISLNGQDVHGSRIIMEIAKGLMVVFDSFFQCLL