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PI0027288 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027288
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr12:7015260..7015887
RNA-Seq ExpressionPI0027288
SyntenyPI0027288
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053607.1 uncharacterized protein E6C27_scaffold190G001830 [Cucumis melo var. makuwa]2.8e-2138.79Show/hide
Query:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGR--------LNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRPP
        WP NG + A  L+VKY ILHKIGI  W  S HAS+IS  L   +Y I   R        LN  +L  ++AP P P  + LSYRLFQG HVPDI+H++ P 
Subjt:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGR--------LNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRPP

Query:  TAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP
         +  +    +      G  +   +  +I+++LT+ESR+ +  I  L+ERR  +D+++  L+   P
Subjt:  TAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP

KAA0066044.1 uncharacterized protein E6C27_scaffold21G00170 [Cucumis melo var. makuwa]1.8e-2340.96Show/hide
Query:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTG---------RLNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRP
        WP NG +  V LSVKY ILHKIGI  W PS HAS++S  L   +Y I             LN+ +L  ++APG  P+ L LSYRLFQ  HVPDI+H++ P
Subjt:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTG---------RLNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRP

Query:  PTAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP
             L    +      G  +   + ++IL++LT++SRS S  I  ++ERR  IDS++  L+   P
Subjt:  PTAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP

KAA0066488.1 uncharacterized protein E6C27_scaffold25G00260 [Cucumis melo var. makuwa]1.4e-2035.29Show/hide
Query:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTG-------------------------------------RLNSNILQVNEAP
        WP NG + A  LSVKY ILHKIGI  W PS HAS++S  L N +Y I                                         LN+ IL  ++AP
Subjt:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTG-------------------------------------RLNSNILQVNEAP

Query:  GPLPSKLQLSYRLFQGRHVPDIEHNIRPPTAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILPD-NEGA
         P P  L LSYRLFQG HV DI+H++       +    N      G  +   + ++IL+ LT+ESRS    I  ++ERR  IDS++  L+   P  N+G 
Subjt:  GPLPSKLQLSYRLFQGRHVPDIEHNIRPPTAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILPD-NEGA

Query:  HGDD
           D
Subjt:  HGDD

KAA0066862.1 uncharacterized protein E6C27_scaffold271G002650 [Cucumis melo var. makuwa]2.8e-2142.5Show/hide
Query:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGRLNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRP---PTAADL
        WP NG + AV LSVKY ILHKIGI  W PS HAS+IS  L     L+    LN  +L  ++AP P P  + LSYRLFQG HVP+I+H++ P   P   D 
Subjt:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGRLNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRP---PTAADL

Query:  PHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP
         H D       G  +   +   I+++LT+ESR+ +  I  L+ERR  +D+++  L+   P
Subjt:  PHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP

XP_008460447.1 PREDICTED: uncharacterized protein LOC103499259 [Cucumis melo]2.8e-2138.79Show/hide
Query:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGR--------LNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRPP
        WP NG + A  L+VKY ILHKIGI  W  S HAS+IS  L   +Y I   R        LN  +L  ++AP P P  + LSYRLFQG HVPDI+H++ P 
Subjt:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGR--------LNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRPP

Query:  TAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP
         +  +    +      G  +   +  +I+++LT+ESR+ +  I  L+ERR  +D+++  L+   P
Subjt:  TAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP

TrEMBL top hitse value%identityAlignment
A0A1S3CC22 uncharacterized protein LOC1034992591.4e-2138.79Show/hide
Query:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGR--------LNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRPP
        WP NG + A  L+VKY ILHKIGI  W  S HAS+IS  L   +Y I   R        LN  +L  ++AP P P  + LSYRLFQG HVPDI+H++ P 
Subjt:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGR--------LNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRPP

Query:  TAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP
         +  +    +      G  +   +  +I+++LT+ESR+ +  I  L+ERR  +D+++  L+   P
Subjt:  TAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP

A0A5A7UGJ3 Uncharacterized protein1.4e-2138.79Show/hide
Query:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGR--------LNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRPP
        WP NG + A  L+VKY ILHKIGI  W  S HAS+IS  L   +Y I   R        LN  +L  ++AP P P  + LSYRLFQG HVPDI+H++ P 
Subjt:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGR--------LNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRPP

Query:  TAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP
         +  +    +      G  +   +  +I+++LT+ESR+ +  I  L+ERR  +D+++  L+   P
Subjt:  TAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP

A0A5A7VFF7 Uncharacterized protein8.6e-2440.96Show/hide
Query:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTG---------RLNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRP
        WP NG +  V LSVKY ILHKIGI  W PS HAS++S  L   +Y I             LN+ +L  ++APG  P+ L LSYRLFQ  HVPDI+H++ P
Subjt:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTG---------RLNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRP

Query:  PTAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP
             L    +      G  +   + ++IL++LT++SRS S  I  ++ERR  IDS++  L+   P
Subjt:  PTAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP

A0A5A7VFI0 Uncharacterized protein6.8e-2135.29Show/hide
Query:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTG-------------------------------------RLNSNILQVNEAP
        WP NG + A  LSVKY ILHKIGI  W PS HAS++S  L N +Y I                                         LN+ IL  ++AP
Subjt:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTG-------------------------------------RLNSNILQVNEAP

Query:  GPLPSKLQLSYRLFQGRHVPDIEHNIRPPTAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILPD-NEGA
         P P  L LSYRLFQG HV DI+H++       +    N      G  +   + ++IL+ LT+ESRS    I  ++ERR  IDS++  L+   P  N+G 
Subjt:  GPLPSKLQLSYRLFQGRHVPDIEHNIRPPTAADLPHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILPD-NEGA

Query:  HGDD
           D
Subjt:  HGDD

A0A5D3DXM9 Uncharacterized protein1.4e-2142.5Show/hide
Query:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGRLNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRP---PTAADL
        WP NG + AV LSVKY ILHKIGI  W PS HAS+IS  L     L+    LN  +L  ++AP P P  + LSYRLFQG HVP+I+H++ P   P   D 
Subjt:  WPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGRLNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRP---PTAADL

Query:  PHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP
         H D       G  +   +   I+++LT+ESR+ +  I  L+ERR  +D+++  L+   P
Subjt:  PHPDNLRTPDGGLLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCATCAAATGGTCATCTTACTGCTGTCAGATTAAGTGTGAAGTACACCATTCTTCACAAAATTGGAATTCACTGTTGGGTTCCTTCATTGCACGCATCTACTAT
ATCTCCTACATTGGCAAACTTGATTTATTTGATTGGTACTGGTCGTCTGAACTCTAATATTCTTCAGGTTAATGAGGCCCCTGGTCCTTTGCCATCAAAGCTTCAATTGA
GTTATAGGTTGTTTCAAGGCAGGCATGTTCCTGACATTGAGCATAACATTCGGCCTCCTACTGCTGCGGACCTTCCTCATCCCGATAATCTACGGACTCCGGATGGTGGT
TTATTGCTTCCCCCTTCTATTGGCAATCAGATTCTACATGCCTTGACTTCGGAATCTCGGAGTCACAGTGTTGTTATTCAAGAGCTCAATGAGCGTCGTAGACTTATTGA
CTCAGTGGTCACGACCCTCCGCTTGATCCTTCCTGACAATGAGGGAGCTCATGGGGATGATCCTTCGGTCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGCCATCAAATGGTCATCTTACTGCTGTCAGATTAAGTGTGAAGTACACCATTCTTCACAAAATTGGAATTCACTGTTGGGTTCCTTCATTGCACGCATCTACTAT
ATCTCCTACATTGGCAAACTTGATTTATTTGATTGGTACTGGTCGTCTGAACTCTAATATTCTTCAGGTTAATGAGGCCCCTGGTCCTTTGCCATCAAAGCTTCAATTGA
GTTATAGGTTGTTTCAAGGCAGGCATGTTCCTGACATTGAGCATAACATTCGGCCTCCTACTGCTGCGGACCTTCCTCATCCCGATAATCTACGGACTCCGGATGGTGGT
TTATTGCTTCCCCCTTCTATTGGCAATCAGATTCTACATGCCTTGACTTCGGAATCTCGGAGTCACAGTGTTGTTATTCAAGAGCTCAATGAGCGTCGTAGACTTATTGA
CTCAGTGGTCACGACCCTCCGCTTGATCCTTCCTGACAATGAGGGAGCTCATGGGGATGATCCTTCGGTCTCTTAG
Protein sequenceShow/hide protein sequence
MWPSNGHLTAVRLSVKYTILHKIGIHCWVPSLHASTISPTLANLIYLIGTGRLNSNILQVNEAPGPLPSKLQLSYRLFQGRHVPDIEHNIRPPTAADLPHPDNLRTPDGG
LLLPPSIGNQILHALTSESRSHSVVIQELNERRRLIDSVVTTLRLILPDNEGAHGDDPSVS