; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027290 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027290
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSmall nuclear ribonucleoprotein-associated protein
Genome locationchr04:446274..450425
RNA-Seq ExpressionPI0027290
SyntenyPI0027290
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017131 - Small ribonucleoprotein associated, SmB/SmN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052454.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa]1.8e-108100Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSAAR
        MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSAAR
Subjt:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSAAR

Query:  PGGAPPQPFP
        PGGAPPQPFP
Subjt:  PGGAPPQPFP

XP_004134546.1 small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus]8.3e-10999.06Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFP
        ARPGGAPPQPFP
Subjt:  ARPGGAPPQPFP

XP_008439504.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo]2.2e-109100Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFP
        ARPGGAPPQPFP
Subjt:  ARPGGAPPQPFP

XP_022925730.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]4.8e-10999.06Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPV
        ARPGGAPPQPFPV
Subjt:  ARPGGAPPQPFPV

XP_038882444.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida]7.5e-11099.53Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPPVPPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPV
        ARPGGAPPQPFPV
Subjt:  ARPGGAPPQPFPV

TrEMBL top hitse value%identityAlignment
A0A0A0KPA9 Small nuclear ribonucleoprotein-associated protein4.0e-10999.06Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAP+IRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFP
        ARPGGAPPQPFP
Subjt:  ARPGGAPPQPFP

A0A1S3AZK2 Small nuclear ribonucleoprotein-associated protein1.1e-109100Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFP
        ARPGGAPPQPFP
Subjt:  ARPGGAPPQPFP

A0A5A7UAP6 Small nuclear ribonucleoprotein-associated protein8.9e-109100Show/hide
Query:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSAAR
        MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSAAR
Subjt:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSAAR

Query:  PGGAPPQPFP
        PGGAPPQPFP
Subjt:  PGGAPPQPFP

A0A6J1EJ14 Small nuclear ribonucleoprotein-associated protein2.3e-10999.06Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPP+GRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPV
        ARPGGAPPQPFPV
Subjt:  ARPGGAPPQPFPV

A0A6J1IQN3 Small nuclear ribonucleoprotein-associated protein1.7e-10797.18Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN+ERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YPAAPVIRPPGQMPMFPGQAPPP+GRGMPPP PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSA

Query:  ARPGGAPPQPFPV
        ARPGGAPPQPF V
Subjt:  ARPGGAPPQPFPV

SwissProt top hitse value%identityAlignment
P14678 Small nuclear ribonucleoprotein-associated proteins B and B'1.5e-4453.24Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP    PPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP

Query:  QFSAARPGGAPPQPFP
             RP   PP   P
Subjt:  QFSAARPGGAPPQPFP

P17136 Small nuclear ribonucleoprotein-associated protein B1.5e-4453.24Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP    PPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP

Query:  QFSAARPGGAPPQPFP
             RP   PP   P
Subjt:  QFSAARPGGAPPQPFP

P27048 Small nuclear ribonucleoprotein-associated protein B1.5e-4453.24Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP    PPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP

Query:  QFSAARPGGAPPQPFP
             RP   PP   P
Subjt:  QFSAARPGGAPPQPFP

Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B'1.5e-4452.31Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP
         A  GPGIGRAAGRG+P   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP    PPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP

Query:  QFSAARPGGAPPQPFP
             RP   PP   P
Subjt:  QFSAARPGGAPPQPFP

Q9TU67 Small nuclear ribonucleoprotein-associated protein B'1.5e-4453.24Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+I+YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   +   AP   PPG+     G  PPP+GRG PPP    PPP
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPP---VPPP

Query:  QFSAARPGGAPPQPFP
             RP   PP   P
Subjt:  QFSAARPGGAPPQPFP

Arabidopsis top hitse value%identityAlignment
AT4G20440.1 small nuclear ribonucleoprotein associated protein B9.2e-8280.56Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPIGRGMPPPV----
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPIGRGMPPPV----

Query:  PPPQFSAARPGGAPPQ
        PP QFS    G  PPQ
Subjt:  PPPQFSAARPGGAPPQ

AT4G20440.2 small nuclear ribonucleoprotein associated protein B9.2e-8280.56Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPIGRGMPPPV----
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPIGRGMPPPV----

Query:  PPPQFSAARPGGAPPQ
        PP QFS    G  PPQ
Subjt:  PPPQFSAARPGGAPPQ

AT4G20440.3 small nuclear ribonucleoprotein associated protein B9.2e-8280.56Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPIGRGMPPPV----
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPIGRGMPPPV----

Query:  PPPQFSAARPGGAPPQ
        PP QFS    G  PPQ
Subjt:  PPPQFSAARPGGAPPQ

AT4G20440.4 small nuclear ribonucleoprotein associated protein B9.2e-8280.56Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPIGRGMPPPV----
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQ  PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPIGRGMPPPV----

Query:  PPPQFSAARPGGAPPQ
        PP QFS    G  PPQ
Subjt:  PPPQFSAARPGGAPPQ

AT5G44500.1 Small nuclear ribonucleoprotein family protein2.2e-7572.25Show/hide
Query:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN
        MSMSKSSKMLQ+INYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKTNEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +
Subjt:  MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN

Query:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPIGRGMPPPV---
          A+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQM   P F GQ  PP   GM PP    
Subjt:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQM---PMFPGQAPPPIGRGMPPPV---

Query:  PPPQFSAAR-------PGG---APPQP
        PPPQ+   +       PGG    PP P
Subjt:  PPPQFSAAR-------PGG---APPQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGGCA
CATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACGTGACGAACGTCGTACCCTTGGTCTCGTTCTTC
TCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTCAATGCTGCGGCTATGGCTGGTCCTGGTATTGGCCGT
GCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGTGGACCTGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCAGTTCCTCAGCTGTCCGCTCCGCCGATGACATATCCGGCTGCACCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGCTCCACCTC
CGATCGGGAGAGGTATGCCTCCCCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAACCTTTCCCGGTCCTCCTCAATTTGCGCAGAGAC
CCATGGGACCTCCACCAACCGGGCAGGTGA
mRNA sequenceShow/hide mRNA sequence
GCAATTTTAGGCTCCAATTTGTAAAACCCTAGGTTTTTCATCCCCCACTCCCCCGCCCGCTTCATTTCTTCTTGCTGGAGTTCTTACTGAAAGAAGAAACCCTAGGTCGC
ATCTCAGTTCAGGTGTTCGACATTCTGGCACAATGTCGATGTCTAAGAGTTCGAAGATGCTCCAGTATATTAATTACCGGATGAGAGTCACCATCCAAGATGGCCGCCAA
TTGGTTGGCAAGTTCATGGCCTTCGATCGGCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCTCCGGCTAAGGGTAAAAAGACTAACGAGGAACG
TGACGAACGTCGTACCCTTGGTCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAGGCCGTCAATG
CTGCGGCTATGGCTGGTCCTGGTATTGGCCGTGCCGCTGGTAGGGGTATCCCGACTGCTCCTTTGGTTCAGGCGCAGCCTGGTCTTGCTGGGCCAGTTCGTGGAGTGGGT
GGACCTGCTCCGGGGATGATGCAGCCTCAAATCTCTCGCCCGCCAGTTCCTCAGCTGTCCGCTCCGCCGATGACATATCCGGCTGCACCCGTTATCCGTCCACCTGGTCA
GATGCCGATGTTTCCTGGGCAAGCTCCACCTCCGATCGGGAGAGGTATGCCTCCCCCGGTGCCTCCACCACAATTCTCTGCAGCGAGACCAGGGGGAGCCCCGCCACAAC
CTTTCCCGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGGTGATGAGGGGACCGCCACCACCACCCAGGCCTGGAATGCCAGCTCCCCCAC
CTCGACCTGGGATGCCTCCTCCGCCCGGTGGCGCTGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCCACCTCCGCCCAACCCACAAAACCAACAGCAAAATCAACAG
CAATAGAGTTGACATATTGCATGTGATGATCTGTGGAGGTCTTCAGTGGATATTATCTTGTGTTGCTTCAACCTAAGGTTCACTTGCCAGGGGCTACAGCTTGGTTCATC
TCTCTGGGCCCAATCTCTCTTGGAATTTGTGTTGATGCTGTTGTAGGATTCGACAATGTACTGTTATTAGCAAATTGTGGTCCTGGTTTTGCAATTTAACCGTTAGAGAT
ATACTTCAAATGCAAGATTTTAATGTGAATTTCCAATTCCTGATCGCCATGTCTCTAGGTAGATTCACTTGCCCCATTCACTTTTTAATCTGTGTTAGGCATTATATAGG
ATTACTCAAGGACCTCAAGTCTGAATAGTACGAACTGAAGGTTCTGTATTTTGGAACCTCTCCTGTGAAAGGAGAAAATCTACATATTTTTGTGTGCATGAGTTGTGTGT
GTGCGTTCTTTTCATGAAACAAATGTACTTTAGATTGGAGAAATATAAAAGGGTAGGAATAAGCAAACTTCTTTCTAATTA
Protein sequenceShow/hide protein sequence
MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGR
AAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAPPPIGRGMPPPVPPPQFSAARPGGAPPQPFPVLLNLRRD
PWDLHQPGR