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PI0027316 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027316
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:14770534..14770905
RNA-Seq ExpressionPI0027316
SyntenyPI0027316
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-3769.92Show/hide
Query:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI
        MS DE+ G   G++SE  N SSGSK KRG +H+E VEVI +A EF NDQLKTI  WPKEKRATEVEL  EVVKQLQDIP+L S+DR KLM+I+  SV+ I
Subjt:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI

Query:  EGFLSIPTELKLEYCNVLLEENV
        EGFLSIPT+LKLEYCN+LLE NV
Subjt:  EGFLSIPTELKLEYCNVLLEENV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]9.8e-4072.5Show/hide
Query:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI
        MSPDEM G   G++SE  NCSSGSK K+G +H+ETVEVIK+A+EF NDQLK IA WPKEKRATEVEL  EV+KQLQDIPEL SRDR KL++I+  SV+ I
Subjt:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI

Query:  EGFLSIPTELKLEYCNVLLE
        EGFLSIPTE KLEYCN+LL+
Subjt:  EGFLSIPTELKLEYCNVLLE

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-3872.5Show/hide
Query:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI
        MS +EM G  VG++SE  NCSSGSK KRG +H+ETVEVI++AMEF NDQLKTIA WPKEKR TEVEL  EVVKQLQ+I EL SRDR KLM+I+  SV+ I
Subjt:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI

Query:  EGFLSIPTELKLEYCNVLLE
        EGFLSIP ELKLEYCN+LL+
Subjt:  EGFLSIPTELKLEYCNVLLE

KAE8646815.1 hypothetical protein Csa_005367, partial [Cucumis sativus]3.7e-3975.41Show/hide
Query:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI
        M PDEMLGT   +SSE  NCSSGSK K GGQH+E V+VI N ME  NDQLK IA W KEKRATEVELHVEVVKQLQDI EL +RDRVKLM+II   VDDI
Subjt:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI

Query:  EGFLSIPTELKLEYCNVLLEEN
        EGFLS PT+LKLEYC VLLE+N
Subjt:  EGFLSIPTELKLEYCNVLLEEN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.7e-3666.67Show/hide
Query:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI
        MSPDEM G   G++SE  NCSS SK KRG + +ETVEVI++ MEF N+QLK IA WPKEKRA EVE+  +VVKQLQDIP+L S+DR KLM+I+  S++ I
Subjt:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI

Query:  EGFLSIPTELKLEYCNVLLEENV
        EGFLSIPTELKLEYCN+LL+  V
Subjt:  EGFLSIPTELKLEYCNVLLEENV

TrEMBL top hitse value%identityAlignment
A0A0A0KFW0 Uncharacterized protein8.1e-4075.61Show/hide
Query:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI
        M PDEMLGT   +SSE  NCSSGSK K GGQH+E V+VI N ME  NDQLK IA W KEKRATEVELHVEVVKQLQDI EL +RDRVKLM+II   VDDI
Subjt:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI

Query:  EGFLSIPTELKLEYCNVLLEENV
        EGFLS PT+LKLEYC VLLE+NV
Subjt:  EGFLSIPTELKLEYCNVLLEENV

A0A5A7SQU2 Putative nuclease HARBI14.7e-4072.5Show/hide
Query:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI
        MSPDEM G   G++SE  NCSSGSK K+G +H+ETVEVIK+A+EF NDQLK IA WPKEKRATEVEL  EV+KQLQDIPEL SRDR KL++I+  SV+ I
Subjt:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI

Query:  EGFLSIPTELKLEYCNVLLE
        EGFLSIPTE KLEYCN+LL+
Subjt:  EGFLSIPTELKLEYCNVLLE

A0A5A7U0H7 Retrotransposon protein8.3e-3766.67Show/hide
Query:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI
        MSPDEM G   G++SE  NCSS SK KRG + +ETVEVI++ MEF N+QLK IA WPKEKRA EVE+  +VVKQLQDIP+L S+DR KLM+I+  S++ I
Subjt:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI

Query:  EGFLSIPTELKLEYCNVLLEENV
        EGFLSIPTELKLEYCN+LL+  V
Subjt:  EGFLSIPTELKLEYCNVLLEENV

A0A5D3BZU3 Retrotransposon protein7.5e-3869.92Show/hide
Query:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI
        MS DE+ G   G++SE  N SSGSK KRG +H+E VEVI +A EF NDQLKTI  WPKEKRATEVEL  EVVKQLQDIP+L S+DR KLM+I+  SV+ I
Subjt:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI

Query:  EGFLSIPTELKLEYCNVLLEENV
        EGFLSIPT+LKLEYCN+LLE NV
Subjt:  EGFLSIPTELKLEYCNVLLEENV

A0A5D3CT52 Retrotransposon protein1.2e-3872.5Show/hide
Query:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI
        MS +EM G  VG++SE  NCSSGSK KRG +H+ETVEVI++AMEF NDQLKTIA WPKEKR TEVEL  EVVKQLQ+I EL SRDR KLM+I+  SV+ I
Subjt:  MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDI

Query:  EGFLSIPTELKLEYCNVLLE
        EGFLSIP ELKLEYCN+LL+
Subjt:  EGFLSIPTELKLEYCNVLLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCAGATGAGATGTTAGGAACATGTGTAGGTCGATCAAGTGAAGAAATAAATTGTTCAAGTGGAAGTAAGAGCAAGCGAGGTGGCCAACATCATGAAACGGTAGA
GGTGATCAAGAATGCAATGGAATTTGCAAATGATCAATTAAAGACAATTGCAATTTGGCCAAAAGAAAAGCGTGCAACAGAGGTCGAATTGCATGTTGAAGTTGTGAAAC
AACTACAAGATATCCCTGAACTATGGAGCCGAGATAGGGTAAAGCTTATGCGAATCATATTATGTAGTGTGGATGACATTGAGGGATTCTTGTCGATTCCAACAGAACTT
AAATTGGAGTATTGCAATGTTCTCTTGGAAGAAAACGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACCAGATGAGATGTTAGGAACATGTGTAGGTCGATCAAGTGAAGAAATAAATTGTTCAAGTGGAAGTAAGAGCAAGCGAGGTGGCCAACATCATGAAACGGTAGA
GGTGATCAAGAATGCAATGGAATTTGCAAATGATCAATTAAAGACAATTGCAATTTGGCCAAAAGAAAAGCGTGCAACAGAGGTCGAATTGCATGTTGAAGTTGTGAAAC
AACTACAAGATATCCCTGAACTATGGAGCCGAGATAGGGTAAAGCTTATGCGAATCATATTATGTAGTGTGGATGACATTGAGGGATTCTTGTCGATTCCAACAGAACTT
AAATTGGAGTATTGCAATGTTCTCTTGGAAGAAAACGTTTGA
Protein sequenceShow/hide protein sequence
MSPDEMLGTCVGRSSEEINCSSGSKSKRGGQHHETVEVIKNAMEFANDQLKTIAIWPKEKRATEVELHVEVVKQLQDIPELWSRDRVKLMRIILCSVDDIEGFLSIPTEL
KLEYCNVLLEENV