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PI0027354 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027354
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:18028900..18030359
RNA-Seq ExpressionPI0027354
SyntenyPI0027354
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]2.7e-6267.39Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHP+DKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLE ++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT AISK++GKGKL AQPD+ NVSAISLR+GK L+TP++ E+KVTS  + L +K+E KEEK+ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-6367.39Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHP+DKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLE ++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT AISK++GKGKLSAQ ++ NVSA+SLR+GK L+TP++ E+K TS P+ L  K+E KEEK+ET+  P +SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.7e-6266.85Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ
        MT LLTSFVQG  +KV KCGVCGLVGHP+DKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLE ++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT  ISK++GKGKL AQPDH NVS ISLR+ K L+TP++ E+KVTS P+ L +K+E KEEK ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-6368.31Show/hide
Query:  TTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQN
        TTLLTSFVQG  +KV KCGVCGLVGH ++KCP+++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLE ++KAL TNT+SFQ 
Subjt:  TTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQN

Query:  EMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
        EMKQQM+ LT AISK++GKGKL AQ DH NVSAISLR+GK L+TP++ E+KVTS P+ L +K+E KEEK+ET+  PS+SK  +
Subjt:  EMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]2.7e-6266.85Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ
        MT LLTSFVQG  +KV KCGVCGLVGHP+DKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLE ++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT  ISK++GKGKL AQPDH NVS ISLR+ K L+TP++ E+KVTS P+ L +K+E KEEK ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.3e-6266.85Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ
        MT LLTSFVQG  +KV KCGVCGLVGHP+DKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLE ++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT  ISK++GKGKL AQPDH NVS ISLR+ K L+TP++ E+KVTS P+ L +K+E KEEK ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

A0A5A7VQ60 Retrotransposon gag protein1.6e-6368.31Show/hide
Query:  TTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQN
        TTLLTSFVQG  +KV KCGVCGLVGH ++KCP+++E+ N++R+YDPHSNTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLE ++KAL TNT+SFQ 
Subjt:  TTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQN

Query:  EMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
        EMKQQM+ LT AISK++GKGKL AQ DH NVSAISLR+GK L+TP++ E+KVTS P+ L +K+E KEEK+ET+  PS+SK  +
Subjt:  EMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

A0A5D3CRR8 Retrotransposon gag protein1.6e-6367.39Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ
        MTTLLTSFVQG  +KV KCGVCGLVGHP+DKCP+++E+ N++RKYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA S+S+NQGTNLE ++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT AISK++GKGKLSAQ ++ NVSA+SLR+GK L+TP++ E+K TS P+ L  K+E KEEK+ET+  P +SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

A0A5D3DCG3 Retrotransposon gag protein1.3e-6266.85Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ
        MT LLTSFVQG  +KV KCGVCGLVGHP+DKCP+++E+ N+++KYDPH NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLE ++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT  ISK++GKGKL AQPDH NVS ISLR+ K L+TP++ E+KVTS P+ L +K+E KEEK ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

E5GBZ4 Retrotransposon gag protein1.3e-6267.39Show/hide
Query:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ
        MTTLLTSFVQG  +KV KCGVC LVGHP+DKCP+++E+ N++RKYDP+ NTYN+GWRDNPNLRWGNDNQ+ +QA  +S+NQGTNLE ++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQ

Query:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
         EMKQQM+ LT AISK++GKGKL AQPD+ NVSAISLR+GK L+TP++ E+KVTS  + L +K+E KEEK+ET+  PS+SK  +
Subjt:  NEMKQQMSHLTNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSS-EEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCCATTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTCATGACAAGTGCCCTGACTTAGTGGA
AGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCTTCTTCAAACAATCAAGGTACAAATTTGGAAGTTTTAGTTAAAGCTCTTGATACTAACACTATCTCTTTTCAGAATGAAATGAAGCAACAGATGTCTCATCTA
ACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTTCAGCTCAGCCTGATCATGACAACGTAAGTGCCATCTCACTTAGAAACGGTAAGACTCTGGAAACCCCTTC
AAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTTCTTCTAAAGGAACAAGGG
ATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCCATTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTCATGACAAGTGCCCTGACTTAGTGGA
AGAGGCAAATGTTATTAGGAAGTACGATCCTCATAGCAACACTTACAACGCCGGTTGGAGAGACAACCCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCGCAAG
CAACCTCTTCTTCAAACAATCAAGGTACAAATTTGGAAGTTTTAGTTAAAGCTCTTGATACTAACACTATCTCTTTTCAGAATGAAATGAAGCAACAGATGTCTCATCTA
ACCAATGCAATAAGCAAGCTAGAAGGTAAAGGCAAACTTTCAGCTCAGCCTGATCATGACAACGTAAGTGCCATCTCACTTAGAAACGGTAAGACTCTGGAAACCCCTTC
AAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTTCTTCTAAAGGAACAAGGG
ATTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGSIKVAKCGVCGLVGHPHDKCPDLVEEANVIRKYDPHSNTYNAGWRDNPNLRWGNDNQRPSQATSSSNNQGTNLEVLVKALDTNTISFQNEMKQQMSHL
TNAISKLEGKGKLSAQPDHDNVSAISLRNGKTLETPSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTRD