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PI0027372 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027372
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr04:22186362..22189368
RNA-Seq ExpressionPI0027372
SyntenyPI0027372
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041246.1 uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa]5.2e-2252.82Show/hide
Query:  NLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRSRTDPTIAIP-----------------IPNIAI
        N ++   Q NDALLQSQASSI+NLELQLGQL S++SRRP+GSLPSNTETPNQ GGSGKEKC  VT RSR + TI  P                   N + 
Subjt:  NLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRSRTDPTIAIP-----------------IPNIAI

Query:  PLLILLPRSTA--QNKDVSSKGMESTGQRKQRSETSQQATSS
        PL   L  +T+  QNK++ +K +EST + +QR E S + TSS
Subjt:  PLLILLPRSTA--QNKDVSSKGMESTGQRKQRSETSQQATSS

KGN51008.1 hypothetical protein Csa_008461 [Cucumis sativus]7.2e-1665.82Show/hide
Query:  SSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRSRTDPTI
        +  ME L REYMQ+NDALLQSQASSI+NLELQLGQLA+D+S RP+G+L  NT+TP Q GGS  +K   VT RSR + TI
Subjt:  SSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRSRTDPTI

TYK27798.1 hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa]8.5e-1762.11Show/hide
Query:  GKHLAPMRGTTTTGHNNRPQHS-QHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAG
        G +     G     H +RP HS   QQQ TT TPS SSSME L+R YM++NDALLQSQA+SIRNLELQ+GQ+A D S RPQ  LPSNTE  NQAG
Subjt:  GKHLAPMRGTTTTGHNNRPQHS-QHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAG

WP_217833224.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]5.0e-1771.23Show/hide
Query:  SSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRS
        SSSME LL+EYMQKNDAL+Q+QASSIRNL+LQLGQ+A +   R +GSLPSNTE P   G SGKE+C AVT RS
Subjt:  SSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRS

XP_030494874.1 uncharacterized protein LOC115710657 [Cannabis sativa]1.2e-1552.83Show/hide
Query:  APMRGTTT--TGHNNRPQHSQHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCH
        AP +G      G + +P+HSQH Q       S  SS+E+L+R+YM KNDA++QSQA+S+RNLELQLG LA++L  RPQGSLPS+TE P +    GKE+C+
Subjt:  APMRGTTT--TGHNNRPQHSQHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCH

Query:  AVTQRS
        A+  RS
Subjt:  AVTQRS

TrEMBL top hitse value%identityAlignment
A0A0A0KMN3 Uncharacterized protein4.9e-1862.92Show/hide
Query:  QHSQH---QQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVT
        QH  H    Q H+++  S+  SME+L +EYMQ+NDALLQSQA+SI+NLELQ+GQ+A+D+SR+P+G+LPSNTE P Q G SGKEKC AVT
Subjt:  QHSQH---QQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVT

A0A0A0KN83 Uncharacterized protein3.5e-1665.82Show/hide
Query:  SSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRSRTDPTI
        +  ME L REYMQ+NDALLQSQASSI+NLELQLGQLA+D+S RP+G+L  NT+TP Q GGS  +K   VT RSR + TI
Subjt:  SSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRSRTDPTI

A0A5A7TGS2 Uncharacterized protein2.5e-2252.82Show/hide
Query:  NLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRSRTDPTIAIP-----------------IPNIAI
        N ++   Q NDALLQSQASSI+NLELQLGQL S++SRRP+GSLPSNTETPNQ GGSGKEKC  VT RSR + TI  P                   N + 
Subjt:  NLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRSRTDPTIAIP-----------------IPNIAI

Query:  PLLILLPRSTA--QNKDVSSKGMESTGQRKQRSETSQQATSS
        PL   L  +T+  QNK++ +K +EST + +QR E S + TSS
Subjt:  PLLILLPRSTA--QNKDVSSKGMESTGQRKQRSETSQQATSS

A0A5D3DWD5 Uncharacterized protein4.1e-1762.11Show/hide
Query:  GKHLAPMRGTTTTGHNNRPQHS-QHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAG
        G +     G     H +RP HS   QQQ TT TPS SSSME L+R YM++NDALLQSQA+SIRNLELQ+GQ+A D S RPQ  LPSNTE  NQAG
Subjt:  GKHLAPMRGTTTTGHNNRPQHS-QHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAG

A0A6J1DYG0 uncharacterized protein LOC1110257645.6e-1442.22Show/hide
Query:  PQHSQHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRS------RTDP
        PQ   +Q+  T    + +S++EN+++EYM + DA++QSQA+S+RN E QLGQLA++L  RPQGS P +TE P +    GKE+C AVT RS       T P
Subjt:  PQHSQHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCHAVTQRS------RTDP

Query:  TIAIPIPNIAIPLLILLPRSTAQNKDVSSKGMEST
        T  + IP+   P + +    T   K    KG E T
Subjt:  TIAIPIPNIAIPLLILLPRSTAQNKDVSSKGMEST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTCAAGGTGACCATCACGGGGAAGCATCTGGCTCCCATGCGAGGTACTACAACAACAGGCCACAACAACAGGCCACAACACTCCCAACATCAACAACAACACAC
CACCACTACTCCATCCACTTCTTCATCTATGGAGAACCTCCTCCGCGAATACATGCAGAAAAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATTTGGAAC
TACAACTAGGGCAGCTAGCTAGCGACTTATCCAGAAGACCACAAGGATCCCTCCCAAGTAATACAGAAACGCCAAACCAGGCGGGGGGATCTGGAAAAGAAAAGTGTCAC
GCGGTGACACAACGAAGCAGAACGGATCCGACCATCGCGATCCCGATACCGAACATAGCAATCCCACTTCTCATTCTACTACCGAGATCGACAGCTCAAAATAAGGACGT
GTCAAGCAAGGGCATGGAGAGCACGGGGCAACGCAAACAACGGAGTGAAACATCTCAACAGGCGACGAGCTCGAAAGGCAAAGAGAGGAAAAGCGAGCTAATTCGCTTGG
CTAGTGTTGATCGCCAACTACTCGAGAGAGTTAGGTTCCCATATAACTTTACGTTGCTTTATACATTTGATCTACACTGCCTGGCACATTCATTCCATGATGAATCGCAT
GTTCACCCGAAGAACATGAGTACGAGACTATGCGAACTGAGGAAACTCGTGACGTGCTGCCTTGAACCAAAGAATGAATGCATAATTCGACGAGGTAAATTACTAAAGGT
TTCTCAACGTCTGGAACGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTCAAGGTGACCATCACGGGGAAGCATCTGGCTCCCATGCGAGGTACTACAACAACAGGCCACAACAACAGGCCACAACACTCCCAACATCAACAACAACACAC
CACCACTACTCCATCCACTTCTTCATCTATGGAGAACCTCCTCCGCGAATACATGCAGAAAAATGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCGCAATTTGGAAC
TACAACTAGGGCAGCTAGCTAGCGACTTATCCAGAAGACCACAAGGATCCCTCCCAAGTAATACAGAAACGCCAAACCAGGCGGGGGGATCTGGAAAAGAAAAGTGTCAC
GCGGTGACACAACGAAGCAGAACGGATCCGACCATCGCGATCCCGATACCGAACATAGCAATCCCACTTCTCATTCTACTACCGAGATCGACAGCTCAAAATAAGGACGT
GTCAAGCAAGGGCATGGAGAGCACGGGGCAACGCAAACAACGGAGTGAAACATCTCAACAGGCGACGAGCTCGAAAGGCAAAGAGAGGAAAAGCGAGCTAATTCGCTTGG
CTAGTGTTGATCGCCAACTACTCGAGAGAGTTAGGTTCCCATATAACTTTACGTTGCTTTATACATTTGATCTACACTGCCTGGCACATTCATTCCATGATGAATCGCAT
GTTCACCCGAAGAACATGAGTACGAGACTATGCGAACTGAGGAAACTCGTGACGTGCTGCCTTGAACCAAAGAATGAATGCATAATTCGACGAGGTAAATTACTAAAGGT
TTCTCAACGTCTGGAACGTTAA
Protein sequenceShow/hide protein sequence
MVVKVTITGKHLAPMRGTTTTGHNNRPQHSQHQQQHTTTTPSTSSSMENLLREYMQKNDALLQSQASSIRNLELQLGQLASDLSRRPQGSLPSNTETPNQAGGSGKEKCH
AVTQRSRTDPTIAIPIPNIAIPLLILLPRSTAQNKDVSSKGMESTGQRKQRSETSQQATSSKGKERKSELIRLASVDRQLLERVRFPYNFTLLYTFDLHCLAHSFHDESH
VHPKNMSTRLCELRKLVTCCLEPKNECIIRRGKLLKVSQRLER