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PI0027417 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027417
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:6635826..6638515
RNA-Seq ExpressionPI0027417
SyntenyPI0027417
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032001.1 uncharacterized protein E6C27_scaffold134G00970 [Cucumis melo var. makuwa]6.5e-1382Show/hide
Query:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
        MKQQMT LTTAISK++GKGKL AQPDHANVSAISLRSGKIL+ P+++EKK
Subjt:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-1380.77Show/hide
Query:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKKWA
        MKQQMT LTTAISK++GKGKLLAQ DHANVSAISLRSGKIL+ P+++EKK A
Subjt:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKKWA
KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-1382Show/hide
Query:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
        MKQQMT LTTAISK++GKGKL AQPDHANVSAISLRSGKIL+ P+++EKK
Subjt:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-1382Show/hide
Query:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
        MKQQMT LTTAISK++GKGKL AQPDHANVSAISLRSGKIL+ P+++EKK
Subjt:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-1382Show/hide
Query:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
        MKQQMT LTTAISK++GKGKL AQPDHANVSAISLRSGKIL+ P+++EKK
Subjt:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
TrEMBL top hitse value%identityAlignment
A0A5A7V594 Retrotransposon gag protein4.1e-1382Show/hide
Query:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
        MKQQMT LTTAISK++GKGKL AQPDHANVSAISLRSGKIL+ P+++EKK
Subjt:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
A0A5D3CB46 Retrotransposon gag protein4.1e-1382Show/hide
Query:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
        MKQQMT LTTAISK++GKGKL AQPDHANVSAISLRSGKIL+ P+++EKK
Subjt:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
A0A5D3CFE7 Retrotransposon gag protein4.1e-1382Show/hide
Query:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
        MKQQMT LTTAISK++GKGKL AQPDHANVSAISLRSGKIL+ P+++EKK
Subjt:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
A0A5D3CZ23 Retrotrans_gag domain-containing protein3.1e-1382Show/hide
Query:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
        MKQQMT LTTAISK++GKGKL AQPDHANVSAISLRSGKIL+ P+++EKK
Subjt:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
A0A5D3DS57 Retrotransposon gag protein4.1e-1382Show/hide
Query:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
        MKQQMT LTTAISK++GKGKL AQPDHANVSAISLRSGKIL+ P+++EKK
Subjt:  MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAACAAATGACTCATCTCACTACTGCTATTAGTAAGTTGGAAGGAAAAGGTAAGCTTCTGGCCCAACCAGATCATGCAAACGTGAGTGCTATCTCACTTAGAAG
TGGTAAGATTCTTGAAATCCCTTCAAGTGAAGAAAAAAAGTGGGCTTGGGCTTGGGCCTTGTGGGCTTGGCGGTTATTCCAGATCACATGCGAGAAGATAATGCTTGCAG
AGTGTGGCGAGCTGAAATTCTGCGGTGAAGCATGCGAGCTTGATAAGTCATCTGAAGAATATGAGCTTCGGCGAGCTGGTGCTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAACAAATGACTCATCTCACTACTGCTATTAGTAAGTTGGAAGGAAAAGGTAAGCTTCTGGCCCAACCAGATCATGCAAACGTGAGTGCTATCTCACTTAGAAG
TGGTAAGATTCTTGAAATCCCTTCAAGTGAAGAAAAAAAGTGGGCTTGGGCTTGGGCCTTGTGGGCTTGGCGGTTATTCCAGATCACATGCGAGAAGATAATGCTTGCAG
AGTGTGGCGAGCTGAAATTCTGCGGTGAAGCATGCGAGCTTGATAAGTCATCTGAAGAATATGAGCTTCGGCGAGCTGGTGCTGAATGA
Protein sequenceShow/hide protein sequence
MKQQMTHLTTAISKLEGKGKLLAQPDHANVSAISLRSGKILEIPSSEEKKWAWAWALWAWRLFQITCEKIMLAECGELKFCGEACELDKSSEEYELRRAGAE