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PI0027423 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027423
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr07:15908856..15909568
RNA-Seq ExpressionPI0027423
SyntenyPI0027423
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048626.1 uncharacterized protein E6C27_scaffold12354G00010 [Cucumis melo var. makuwa]7.3e-4274.58Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA
        ++KG AK+IEK+ I+A LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  LSPTQKKLQKQGY IPNSR G+GY+SSEP+RIT K K K A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA

Query:  NTCHITVEECNDSKEDEK
        NTCHITVEE  DS+E +K
Subjt:  NTCHITVEECNDSKEDEK

KAA0050182.1 gag protease polyprotein [Cucumis melo var. makuwa]7.3e-4274.58Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  LSPTQKKLQKQGY IPNS+ G+GY+SSEP+RIT K K K A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA

Query:  NTCHITVEECNDSKEDEK
        NTCHITVEE  DSKE +K
Subjt:  NTCHITVEECNDSKEDEK

KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]4.3e-4275.42Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  LSPTQKKLQKQGY IPNSR G+GY+SSEPIRIT K K K  
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA

Query:  NTCHITVEECNDSKEDEK
        NTCHITVEE  DSKE +K
Subjt:  NTCHITVEECNDSKEDEK

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]1.2e-4173.73Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA
        ++KG AK+IEK+ ++A LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  LSPTQKKLQKQGY IPNSR G+GY+SSEP+RIT K K K A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA

Query:  NTCHITVEECNDSKEDEK
        NTCHITVEE  DS+E +K
Subjt:  NTCHITVEECNDSKEDEK

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]4.3e-4275.42Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  LSPTQKKLQKQGY IPNSR G+GY+SSEPIRIT K K K  
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA

Query:  NTCHITVEECNDSKEDEK
        NTCHITVEE  DSKE +K
Subjt:  NTCHITVEECNDSKEDEK

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H6.0e-4273.73Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA
        ++KG AK+IEK+ ++A LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  LSPTQKKLQKQGY IPNSR G+GY+SSEP+RIT K K K A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA

Query:  NTCHITVEECNDSKEDEK
        NTCHITVEE  DS+E +K
Subjt:  NTCHITVEECNDSKEDEK

A0A5A7U2W9 Gag protease polyprotein3.5e-4274.58Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  LSPTQKKLQKQGY IPNS+ G+GY+SSEP+RIT K K K A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA

Query:  NTCHITVEECNDSKEDEK
        NTCHITVEE  DSKE +K
Subjt:  NTCHITVEECNDSKEDEK

A0A5A7U320 Uncharacterized protein3.5e-4274.58Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA
        ++KG AK+IEK+ I+A LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  LSPTQKKLQKQGY IPNSR G+GY+SSEP+RIT K K K A
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA

Query:  NTCHITVEECNDSKEDEK
        NTCHITVEE  DS+E +K
Subjt:  NTCHITVEECNDSKEDEK

A0A5A7V4F2 Reverse transcriptase domain-containing protein2.1e-4275.42Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  LSPTQKKLQKQGY IPNSR G+GY+SSEPIRIT K K K  
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA

Query:  NTCHITVEECNDSKEDEK
        NTCHITVEE  DSKE +K
Subjt:  NTCHITVEECNDSKEDEK

A0A5D3BTY1 Ribonuclease H2.1e-4275.42Show/hide
Query:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA
        ++KG AK+IEK+ +EA LPE+RT EGFDPKAY+LMA AGYDFTTRT+LKS+KIFDER  LSPTQKKLQKQGY IPNSR G+GY+SSEPIRIT K K K  
Subjt:  MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAA

Query:  NTCHITVEECNDSKEDEK
        NTCHITVEE  DSKE +K
Subjt:  NTCHITVEECNDSKEDEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAAGGAGGGGCGAAAAGAATTGAGAAAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACAACGGAGGGATTTGACCCAAAAGCATATAGGTTGATGGCAAC
GGCGGGTTATGACTTTACAACCCGCACTAAGCTCAAAAGCATGAAGATATTTGATGAAAGGCATGGGCTTTCTCCCACGCAAAAGAAGCTTCAAAAGCAAGGATATTTTA
TACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCAATTCGAATAACTAATAAAGCAAAAGGAAAAGCTGCTAACACATGCCACATTACTGTTGAAGAATGC
AACGATTCTAAAGAAGACGAAAAAAGGGAAAAGATTAAATACAACTTCGGTTACGCGAACCTCTGCCTTCAAAAGGTTAAGTGTGTCGGTGACAAGAGACCAGAAGAAAC
CTCTCATATCTGTTTCAAGCAAACCTGGCTTAGTGACGAAGGACGATTGAATTCGCAGCACTGTTCCATCGAGAATGGAAAGGAAGTTGTTCGTCTCAGTAAACACAGAG
GGTTCATTAAAAGTAAAACGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAAGGAGGGGCGAAAAGAATTGAGAAAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACAACGGAGGGATTTGACCCAAAAGCATATAGGTTGATGGCAAC
GGCGGGTTATGACTTTACAACCCGCACTAAGCTCAAAAGCATGAAGATATTTGATGAAAGGCATGGGCTTTCTCCCACGCAAAAGAAGCTTCAAAAGCAAGGATATTTTA
TACCAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCAATTCGAATAACTAATAAAGCAAAAGGAAAAGCTGCTAACACATGCCACATTACTGTTGAAGAATGC
AACGATTCTAAAGAAGACGAAAAAAGGGAAAAGATTAAATACAACTTCGGTTACGCGAACCTCTGCCTTCAAAAGGTTAAGTGTGTCGGTGACAAGAGACCAGAAGAAAC
CTCTCATATCTGTTTCAAGCAAACCTGGCTTAGTGACGAAGGACGATTGAATTCGCAGCACTGTTCCATCGAGAATGGAAAGGAAGTTGTTCGTCTCAGTAAACACAGAG
GGTTCATTAAAAGTAAAACGACATGA
Protein sequenceShow/hide protein sequence
MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYRLMATAGYDFTTRTKLKSMKIFDERHGLSPTQKKLQKQGYFIPNSRPGVGYKSSEPIRITNKAKGKAANTCHITVEEC
NDSKEDEKREKIKYNFGYANLCLQKVKCVGDKRPEETSHICFKQTWLSDEGRLNSQHCSIENGKEVVRLSKHRGFIKSKTT