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PI0027443 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027443
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr10:10224487..10225394
RNA-Seq ExpressionPI0027443
SyntenyPI0027443
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037398.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0886.11Show/hide
Query:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
        MLEKCFDV  C+EERKV+LAT LLQKEAEGWWKSIL
Subjt:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
KAA0042086.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-0886.11Show/hide
Query:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
        MLEKCFDV  C EERKV+LAT LLQKEAEGWWKSIL
Subjt:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
KAA0045364.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]7.6e-0988.89Show/hide
Query:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
        MLEKCFDVT C EERKV+LAT LLQKEAEGWWKSIL
Subjt:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
TYJ97513.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-0886.11Show/hide
Query:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
        MLEKCFDV  C+EERKV+LAT LLQKEAEGWWKSIL
Subjt:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
TYK18029.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-0886.11Show/hide
Query:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
        MLEKCFDV  C EERKV+LAT LLQKEAEGWWKSIL
Subjt:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
TrEMBL top hitse value%identityAlignment
A0A5A7T3N0 Reverse transcriptase1.1e-0886.11Show/hide
Query:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
        MLEKCFDV  C+EERKV+LAT LLQKEAEGWWKSIL
Subjt:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
A0A5A7TQH3 Gag protease polyprotein-like protein3.7e-0988.89Show/hide
Query:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
        MLEKCFDVT C EERKV+LAT LLQKEAEGWWKSIL
Subjt:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
A0A5D3BDX4 Reverse transcriptase1.1e-0886.11Show/hide
Query:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
        MLEKCFDV  C+EERKV+LAT LLQKEAEGWWKSIL
Subjt:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein1.4e-0883.33Show/hide
Query:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
        MLEKCFDV YC +ERKV+LAT LLQK+AEGWWKSIL
Subjt:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
A0A5D3D3U4 Reverse transcriptase1.4e-0886.11Show/hide
Query:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
        MLEKCFDV  C EERKV+LAT LLQKEAEGWWKSIL
Subjt:  MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSIL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGAGAAGTGCTTTGATGTGACATACTGTTCTGAAGAGAGGAAGGTTAAGTTAGCCACTTTACTGCTACAAAAAGAAGCAGAGGGATGGTGGAAATCCATCCTGTT
AGACGCAGTAGGCCACTTCAAGAGAGATTGCTCGCAGTTGGGGCAAAGTGACCAGATGGTCGAGTTCCAAGCAGTAGAGCAACTGAAAGAGTTATGGGAAGACCTTGCCA
GCAGGGCAAGGTGTTTGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGAGAAGTGCTTTGATGTGACATACTGTTCTGAAGAGAGGAAGGTTAAGTTAGCCACTTTACTGCTACAAAAAGAAGCAGAGGGATGGTGGAAATCCATCCTGTT
AGACGCAGTAGGCCACTTCAAGAGAGATTGCTCGCAGTTGGGGCAAAGTGACCAGATGGTCGAGTTCCAAGCAGTAGAGCAACTGAAAGAGTTATGGGAAGACCTTGCCA
GCAGGGCAAGGTGTTTGCCATGA
Protein sequenceShow/hide protein sequence
MLEKCFDVTYCSEERKVKLATLLLQKEAEGWWKSILLDAVGHFKRDCSQLGQSDQMVEFQAVEQLKELWEDLASRARCLP