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PI0027508 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027508
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionProtein RADIALIS-like 1
Genome locationchr01:6162219..6163174
RNA-Seq ExpressionPI0027508
SyntenyPI0027508
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036165.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]2.1e-2794.12Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        MASMTA GPST WT KQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVK+HYQLLVEDVKHIESG
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]3.6e-2794.12Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        MASMTA GPSTTWT  QNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVK HYQLLVEDVKHIESG
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

PON86029.1 Octamer-binding transcription factor [Trema orientale]7.0e-2380.6Show/hide
Query:  ASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        +SM++RG S +WT KQNKAFEKALAVYDKDTP+RW NVAKA+GGKT EEVK+HY+LLVEDVKHIESG
Subjt:  ASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]5.4e-2385.29Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        MASM+A G S  WT KQNKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVK+HYQLL+EDVKHIESG
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

XP_022952074.1 protein RADIALIS-like 1 [Cucurbita moschata]7.0e-2382.35Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        MASM+A G + +WT KQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK+HYQLL++DVK IESG
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

TrEMBL top hitse value%identityAlignment
A0A0A0K3K5 SANT domain-containing protein4.8e-3392.5Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEPAPSVFEE
        MASMTA GPSTTWT  QNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVK HYQLLVEDVKHIESG  IEPAPSVFEE
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEPAPSVFEE

A0A1S3BGF6 protein RADIALIS-like 12.6e-2385.29Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        MASM+A G S  WT KQNKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVK+HYQLL+EDVKHIESG
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

A0A2P5EKH9 Octamer-binding transcription factor3.4e-2380.6Show/hide
Query:  ASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        +SM++RG S +WT KQNKAFEKALAVYDKDTP+RW NVAKA+GGKT EEVK+HY+LLVEDVKHIESG
Subjt:  ASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

A0A5A7T3V4 Protein RADIALIS-like 11.0e-2794.12Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        MASMTA GPST WT KQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVK+HYQLLVEDVKHIESG
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

A0A6J1GKK4 protein RADIALIS-like 13.4e-2382.35Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        MASM+A G + +WT KQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK+HYQLL++DVK IESG
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.4e-1864.18Show/hide
Query:  ASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        +SM+++  S +WT KQNKAFE+ALA YD+DTP RW NVAK +GGKT EEVK+HY+LLV+D+  IE+G
Subjt:  ASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

Q1A173 Protein RADIALIS-like 61.9e-1860.76Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEPAPSVFE
        MAS  +R   + WT  QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK+HY +LVED+ +IE+G    P    FE
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEPAPSVFE

Q58FS3 Transcription factor RADIALIS3.4e-2067.19Show/hide
Query:  TARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        + RG    W+ K+NKAFE+ALAVYDKDTP+RW NVA+A+ G+T EEVKKHY++LVED+K+IESG
Subjt:  TARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

Q6NNN0 Protein RADIALIS-like 37.1e-1860.94Show/hide
Query:  STTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEP
        S +WT K+NK FE+ALA YD+DTP+RW NVA+A+GGK+ EEV++HY+LL+ DV  IESG +  P
Subjt:  STTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEP

Q9SIJ5 Protein RADIALIS-like 29.3e-1865.15Show/hide
Query:  SMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        SM++ G S +WT KQNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE K+ Y LLV D++ IE+G
Subjt:  SMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.6e-1965.15Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIE
        MAS ++   S++WT+KQNK FE+ALAVYDKDTP+RW NVAKA+G K+ EEVK+HY +LVED+ +IE
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIE

AT1G75250.1 RAD-like 61.3e-1960.76Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEPAPSVFE
        MAS  +R   + WT  QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK+HY +LVED+ +IE+G    P    FE
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEPAPSVFE

AT1G75250.2 RAD-like 61.3e-1960.76Show/hide
Query:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEPAPSVFE
        MAS  +R   + WT  QNK FE+ALAVYDKDTP+RW NVAKA+GGKT EEVK+HY +LVED+ +IE+G    P    FE
Subjt:  MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEPAPSVFE

AT2G21650.1 Homeodomain-like superfamily protein6.6e-1965.15Show/hide
Query:  SMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        SM++ G S +WT KQNKAFE+ALAVYD+DTP+RW NVA+A+GGKT EE K+ Y LLV D++ IE+G
Subjt:  SMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG

AT4G39250.1 RAD-like 11.7e-1964.18Show/hide
Query:  ASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG
        +SM+++  S +WT KQNKAFE+ALA YD+DTP RW NVAK +GGKT EEVK+HY+LLV+D+  IE+G
Subjt:  ASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATGACTGCTCGTGGACCAAGCACTACATGGACTACAAAGCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGTT
GAATGTTGCGAAGGCCATTGGTGGGAAAACTGAAGAAGAAGTGAAAAAGCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGAAGTTGGATTGAGCCAG
CTCCTTCAGTGTTTGAAGAATAG
mRNA sequenceShow/hide mRNA sequence
CTCTAACCCTTTAATTATTATTACTTTTTCTTCCCCTTCACTTCAAACCCTTTTAAGGCTTCCTTTTTATTTTGTCAATGGCTTCCATGACTGCTCGTGGACCAAGCACT
ACATGGACTACAAAGCAAAACAAAGCATTTGAGAAAGCTTTGGCAGTTTATGATAAAGACACACCTGAGAGATGGTTGAATGTTGCGAAGGCCATTGGTGGGAAAACTGA
AGAAGAAGTGAAAAAGCATTATCAACTTCTTGTGGAGGATGTTAAGCATATTGAGTCTGGAAGTTGGATTGAGCCAGCTCCTTCAGTGTTTGAAGAATAGAAGGAGGAAA
AAACCATATTATGTTTGTCTTTTTT
Protein sequenceShow/hide protein sequence
MASMTARGPSTTWTTKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKKHYQLLVEDVKHIESGSWIEPAPSVFEE