CuGenDBv2

Gene ID	PI0027532
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Photosystem II protein D1
Genome location	chr01:20639710..20640311
RNA-Seq Expression	PI0027532
Synteny	PI0027532
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0042170 - plastid membrane (cellular component) GO:0042651 - thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ACS45316.1 photosystem II protein D1, partial [Hexalectris spicata]

1.8e-39

84.47

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYND PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

ACS45321.1 photosystem II protein D1, partial [Hexalectris spicata]

1.8e-39

84.47

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYND PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

KAE9592019.1 Photosystem II protein D1 [Lupinus albus]

1.4e-39

84.47

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Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYN  PYELIVLHFL GV      EWELSFRLGMHPWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

QEV84645.1 photosystem II protein D1 [Hexalectris spicata]

1.8e-39

84.47

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Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYND PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

TYJ41356.1 hypothetical protein E1A91_A03G015600v1 [Gossypium mustelinum]

1.4e-39

83.5

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Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREP+SGSLLY NNIIYGAIIPTSAAI LHFYPIWEA SVDEWLYN  PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

TrEMBL top hits

e value

%identity

Alignment

A0A5D2ZUR6 32 kDa thylakoid membrane protein

6.7e-40

83.5

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREP+SGSLLY NNIIYGAIIPTSAAI LHFYPIWEA SVDEWLYN  PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

A0A5J6KBV6 Photosystem II protein D1

8.7e-40

84.47

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYND PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

A0A6A4NXC7 Photosystem II protein D1

6.7e-40

84.47

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYN  PYELIVLHFL GV      EWELSFRLGMHPWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

D4HMZ9 Photosystem II protein D1 (Fragment)

8.7e-40

84.47

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYND PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

D4HN00 Photosystem II protein D1 (Fragment)

8.7e-40

84.47

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYND PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

SwissProt top hits

e value

%identity

Alignment

A1E9Y8 Photosystem II protein D1

1.5e-41

83.5

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYN  PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

A4QJ96 Photosystem II protein D1

1.5e-41

83.5

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYN  PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

A4QJI0 Photosystem II protein D1

1.5e-41

83.5

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYN  PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

P02956 Photosystem II protein D1

1.5e-41

83.5

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYN  PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

Q3V554 Photosystem II protein D1

1.5e-41

83.5

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYN  PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

1.1e-42

83.5

Show/hide

Query:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF
        DIDGIREPVSGSLLY NNII GAIIPTSAAI LHFYPIWEA SVDEWLYN  PYELIVLHFL GV      EWELSFRLGM PWI VAYSAPV AAT VF
Subjt:  DIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGV------EWELSFRLGMHPWIVVAYSAPVVAATTVF

Query:  LIY
        LIY
Subjt:  LIY

Sequences

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CDS sequence

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ATGTATTCCAAAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGAAAACAATATTATTTATGGTGCTATTATCCCTACTTCTGCGGCTATTGATTT
GCACTTTTACCCAATTTGGGAAGCTCCTTCCGTTGATGAATGGTTATACAACGATGATCCTTATGAGCTAATTGTTCTACACTTCTTACGTGGTGTAGAGTGGGAACTTA
GTTTTCGTCTGGGTATGCATCCTTGGATTGTTGTTGCATATTCAGCTCCTGTCGTAGCTGCTACTACTGTTTTCTTGATCTACCAATAG

mRNA sequence

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Protein sequence

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MYSKDIDGIREPVSGSLLYENNIIYGAIIPTSAAIDLHFYPIWEAPSVDEWLYNDDPYELIVLHFLRGVEWELSFRLGMHPWIVVAYSAPVVAATTVFLIYQ

PI0027532 (gene) of Melon (PI 482460) v1 genome