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PI0027534 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027534
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr10:3039304..3040907
RNA-Seq ExpressionPI0027534
SyntenyPI0027534
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035966.1 F5J5.1 [Cucumis melo var. makuwa]3.2e-5254.63Show/hide
Query:  LSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLS
        L+ E++A+ L+ G+L  WP NG I   +LSVKY ILHK+GI NWFPSLHASS+ AAL +FLYQI   D+VD G FI +QLL+HVGSFGVK+ I FP L S
Subjt:  LSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLS

Query:  SLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVD
        SLLLH +  +L  S+APG  PKT++LRYRLFQGSH  D+     P+ GP    T  +D    G  +   LA+RI + L+ ES+ + NSI++LS RR EVD
Subjt:  SLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVD

Query:  ALLRHLKALFPSNSTQ
        A +RHLK+  PS S Q
Subjt:  ALLRHLKALFPSNSTQ

KAA0042302.1 F9C16.13 [Cucumis melo var. makuwa]2.1e-5146.13Show/hide
Query:  LEPVTTKPIPSDSIPFPNAPSSQNVSSSPISEPVFSSIPHVPSSSVPLSKPVCPDEFSIPSHELRAYLSQSSPS--PPLSPEVVAS---ELTGGSLRVWP
        L PVT + +PSD       P S +   S  +E VF     +P+   P      P   S   H +R  L  S P   P   PE+  +   + T G+L  WP
Subjt:  LEPVTTKPIPSDSIPFPNAPSSQNVSSSPISEPVFSSIPHVPSSSVPLSKPVCPDEFSIPSHELRAYLSQSSPS--PPLSPEVVAS---ELTGGSLRVWP

Query:  SNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGL
         NG I   +LSVKY ILHK+GIANWFPS HASS+ AAL +FLYQI   D+VD G+FI +QLL+HVGSFGVK+ I F  L SSLLLH +  +L  SNAP  
Subjt:  SNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGL

Query:  APKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNSTQ
         PKT++L YRLFQGSH +D+     P+ G     T  +D  + G  +   LA+RI + L+ ES  L NSI++LS RR E DAL+RH K+  PS S Q
Subjt:  APKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNSTQ

TYK25712.1 uncharacterized protein E5676_scaffold2736G00070 [Cucumis melo var. makuwa]2.7e-5149.61Show/hide
Query:  PSSSVPLSKPVCPDEFSIPSHELRAYLSQS-----SPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASF
        PSS    S  +   +F + S  +  +L  +     SPS P + EV+A+ L+ G+L  WP NG I   +L+VKY ILHK+GIANWFPS HASS+ AAL +F
Subjt:  PSSSVPLSKPVCPDEFSIPSHELRAYLSQS-----SPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASF

Query:  LYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIP
        LYQI   D+VD+G+FI +QLL+HVGSFG+K+ I F  L SSLLLH +  +L  S+APG  PKT++L YRLFQGSH  D+     P+ GP    T  +D  
Subjt:  LYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIP

Query:  STGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNS
          G  +   LA+RI + L+ ES  L NSI++LS R+ EVDAL+RHLK+L PS S
Subjt:  STGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNS

XP_008462856.1 PREDICTED: uncharacterized protein LOC103501137 [Cucumis melo]3.2e-5254.67Show/hide
Query:  LSQSSPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKI
        +  SS  P  + EV+A+ L+GG+L  WP NG I V +LSVKY ILHK+GIANWFPS HASS+ AAL +FLYQI   D+VD G+FI +QLL HVGSF VK+
Subjt:  LSQSSPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKI

Query:  SIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISI
         I FP L SSLLLH +  +L  S+APG  PKT++L YRLFQGSH  D+     P+ GP    T  +D  + G  +   LA+RI + L+ ES+ L NSI++
Subjt:  SIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISI

Query:  LSARRFEVDALLRHLKALFPSNSTQ
        LS RR EVDAL+RHLK+  PS S Q
Subjt:  LSARRFEVDALLRHLKALFPSNSTQ

XP_008465605.1 PREDICTED: uncharacterized protein LOC103503245 [Cucumis melo]2.7e-5149.61Show/hide
Query:  PSSSVPLSKPVCPDEFSIPSHELRAYLSQS-----SPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASF
        PSS    S  +   +F + S  +  +L  +     SPS P + EV+A+ L+ G+L  WP NG I   +L+VKY ILHK+GIANWFPS HASS+ AAL +F
Subjt:  PSSSVPLSKPVCPDEFSIPSHELRAYLSQS-----SPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASF

Query:  LYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIP
        LYQI   D+VD+G+FI +QLL+HVGSFG+K+ I F  L SSLLLH +  +L  S+APG  PKT++L YRLFQGSH  D+     P+ GP    T  +D  
Subjt:  LYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIP

Query:  STGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNS
          G  +   LA+RI + L+ ES  L NSI++LS R+ EVDAL+RHLK+L PS S
Subjt:  STGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNS

TrEMBL top hitse value%identityAlignment
A0A1S3CHW3 uncharacterized protein LOC1035011371.6e-5254.67Show/hide
Query:  LSQSSPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKI
        +  SS  P  + EV+A+ L+GG+L  WP NG I V +LSVKY ILHK+GIANWFPS HASS+ AAL +FLYQI   D+VD G+FI +QLL HVGSF VK+
Subjt:  LSQSSPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKI

Query:  SIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISI
         I FP L SSLLLH +  +L  S+APG  PKT++L YRLFQGSH  D+     P+ GP    T  +D  + G  +   LA+RI + L+ ES+ L NSI++
Subjt:  SIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISI

Query:  LSARRFEVDALLRHLKALFPSNSTQ
        LS RR EVDAL+RHLK+  PS S Q
Subjt:  LSARRFEVDALLRHLKALFPSNSTQ

A0A1S3CPM5 uncharacterized protein LOC1035032451.3e-5149.61Show/hide
Query:  PSSSVPLSKPVCPDEFSIPSHELRAYLSQS-----SPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASF
        PSS    S  +   +F + S  +  +L  +     SPS P + EV+A+ L+ G+L  WP NG I   +L+VKY ILHK+GIANWFPS HASS+ AAL +F
Subjt:  PSSSVPLSKPVCPDEFSIPSHELRAYLSQS-----SPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASF

Query:  LYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIP
        LYQI   D+VD+G+FI +QLL+HVGSFG+K+ I F  L SSLLLH +  +L  S+APG  PKT++L YRLFQGSH  D+     P+ GP    T  +D  
Subjt:  LYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIP

Query:  STGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNS
          G  +   LA+RI + L+ ES  L NSI++LS R+ EVDAL+RHLK+L PS S
Subjt:  STGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNS

A0A5A7T169 F5J5.11.6e-5254.63Show/hide
Query:  LSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLS
        L+ E++A+ L+ G+L  WP NG I   +LSVKY ILHK+GI NWFPSLHASS+ AAL +FLYQI   D+VD G FI +QLL+HVGSFGVK+ I FP L S
Subjt:  LSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLS

Query:  SLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVD
        SLLLH +  +L  S+APG  PKT++LRYRLFQGSH  D+     P+ GP    T  +D    G  +   LA+RI + L+ ES+ + NSI++LS RR EVD
Subjt:  SLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVD

Query:  ALLRHLKALFPSNSTQ
        A +RHLK+  PS S Q
Subjt:  ALLRHLKALFPSNSTQ

A0A5A7TFV3 F9C16.131.0e-5146.13Show/hide
Query:  LEPVTTKPIPSDSIPFPNAPSSQNVSSSPISEPVFSSIPHVPSSSVPLSKPVCPDEFSIPSHELRAYLSQSSPS--PPLSPEVVAS---ELTGGSLRVWP
        L PVT + +PSD       P S +   S  +E VF     +P+   P      P   S   H +R  L  S P   P   PE+  +   + T G+L  WP
Subjt:  LEPVTTKPIPSDSIPFPNAPSSQNVSSSPISEPVFSSIPHVPSSSVPLSKPVCPDEFSIPSHELRAYLSQSSPS--PPLSPEVVAS---ELTGGSLRVWP

Query:  SNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGL
         NG I   +LSVKY ILHK+GIANWFPS HASS+ AAL +FLYQI   D+VD G+FI +QLL+HVGSFGVK+ I F  L SSLLLH +  +L  SNAP  
Subjt:  SNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGL

Query:  APKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNSTQ
         PKT++L YRLFQGSH +D+     P+ G     T  +D  + G  +   LA+RI + L+ ES  L NSI++LS RR E DAL+RH K+  PS S Q
Subjt:  APKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNSTQ

A0A5D3DQA5 Uncharacterized protein1.3e-5149.61Show/hide
Query:  PSSSVPLSKPVCPDEFSIPSHELRAYLSQS-----SPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASF
        PSS    S  +   +F + S  +  +L  +     SPS P + EV+A+ L+ G+L  WP NG I   +L+VKY ILHK+GIANWFPS HASS+ AAL +F
Subjt:  PSSSVPLSKPVCPDEFSIPSHELRAYLSQS-----SPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHKVGIANWFPSLHASSVLAALASF

Query:  LYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIP
        LYQI   D+VD+G+FI +QLL+HVGSFG+K+ I F  L SSLLLH +  +L  S+APG  PKT++L YRLFQGSH  D+     P+ GP    T  +D  
Subjt:  LYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSGPS--STEHFDIP

Query:  STGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNS
          G  +   LA+RI + L+ ES  L NSI++LS R+ EVDAL+RHLK+L PS S
Subjt:  STGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGAGTTCGTTTAAGAGGAGGAGCCCATTTTAAATGTATTCATGCACGTCGTCCCTTTGGAAAATCTTCTATAATTGGTAAGTCTTCGATTTTACCTCCTACTAA
GTTAAACTTGCATTCTCATTCTCTTGTGTCTCATCCAACATCATCAATTGAGCATTCTGACACTGATTCTGATGAACAAGTTCATGTTAGCTTGGATACTTTGGTCCGTC
GATCATCGGCTTCCAAGCCTTGTCAAGAACCCTCTCAGACTAAATCTGCAAAACCTTCTTCCTCTACATATCATCCATCTGGTTCTCCTTATCCTCATTTAGAACCTGTT
ACTACAAAACCTATCCCTTCTGATTCTATTCCATTTCCTAACGCCCCTTCATCTCAAAATGTGTCATCTTCTCCTATTTCAGAACCTGTGTTCTCCTCAATTCCTCATGT
TCCTAGTTCCTCTGTTCCTCTATCTAAACCTGTTTGTCCTGATGAGTTCTCTATTCCTTCCCATGAGCTGAGAGCTTATTTATCACAATCCTCTCCTTCACCTCCTCTTT
CACCAGAAGTTGTGGCTTCTGAACTAACTGGAGGATCCCTTAGAGTCTGGCCTTCAAATGGTTCGATTTTTGTTATTTCTCTTAGTGTCAAGTATGTGATTCTGCATAAA
GTTGGCATTGCAAATTGGTTTCCCTCTTTACATGCATCTAGTGTTTTAGCTGCTCTAGCCTCATTTCTGTACCAAATTGGTACTGGTGACCAAGTTGATGTTGGATCTTT
TATCTTGTCCCAACTGCTTAAACATGTGGGATCTTTTGGTGTTAAAATTTCCATTCCTTTTCCTCTGCTTTTGTCTAGTCTGTTGTTACATCAACATTCGGGGATTCTGT
TAGTCTCTAATGCTCCTGGTCTAGCCCCAAAAACCTTGTCCCTTAGATACAGACTCTTTCAAGGTTCACATGCTTCTGATCTTGCTCCATTTGACCAGCCATCAAGTGGT
CCTTCTTCAACAGAGCATTTTGATATTCCTTCTACTGGGCTGCTTATTCCCTCATCCTTGGCCTCCAGGATTTTTGATCTGTTGTCTACTGAATCACAAGTTCTGGGAAA
CTCGATTTCTATCTTGTCTGCCAGGCGTTTTGAAGTTGATGCTTTACTTCGTCACTTAAAGGCACTGTTTCCTTCCAATTCTACTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATGGAGTTCGTTTAAGAGGAGGAGCCCATTTTAAATGTATTCATGCACGTCGTCCCTTTGGAAAATCTTCTATAATTGGTAAGTCTTCGATTTTACCTCCTACTAA
GTTAAACTTGCATTCTCATTCTCTTGTGTCTCATCCAACATCATCAATTGAGCATTCTGACACTGATTCTGATGAACAAGTTCATGTTAGCTTGGATACTTTGGTCCGTC
GATCATCGGCTTCCAAGCCTTGTCAAGAACCCTCTCAGACTAAATCTGCAAAACCTTCTTCCTCTACATATCATCCATCTGGTTCTCCTTATCCTCATTTAGAACCTGTT
ACTACAAAACCTATCCCTTCTGATTCTATTCCATTTCCTAACGCCCCTTCATCTCAAAATGTGTCATCTTCTCCTATTTCAGAACCTGTGTTCTCCTCAATTCCTCATGT
TCCTAGTTCCTCTGTTCCTCTATCTAAACCTGTTTGTCCTGATGAGTTCTCTATTCCTTCCCATGAGCTGAGAGCTTATTTATCACAATCCTCTCCTTCACCTCCTCTTT
CACCAGAAGTTGTGGCTTCTGAACTAACTGGAGGATCCCTTAGAGTCTGGCCTTCAAATGGTTCGATTTTTGTTATTTCTCTTAGTGTCAAGTATGTGATTCTGCATAAA
GTTGGCATTGCAAATTGGTTTCCCTCTTTACATGCATCTAGTGTTTTAGCTGCTCTAGCCTCATTTCTGTACCAAATTGGTACTGGTGACCAAGTTGATGTTGGATCTTT
TATCTTGTCCCAACTGCTTAAACATGTGGGATCTTTTGGTGTTAAAATTTCCATTCCTTTTCCTCTGCTTTTGTCTAGTCTGTTGTTACATCAACATTCGGGGATTCTGT
TAGTCTCTAATGCTCCTGGTCTAGCCCCAAAAACCTTGTCCCTTAGATACAGACTCTTTCAAGGTTCACATGCTTCTGATCTTGCTCCATTTGACCAGCCATCAAGTGGT
CCTTCTTCAACAGAGCATTTTGATATTCCTTCTACTGGGCTGCTTATTCCCTCATCCTTGGCCTCCAGGATTTTTGATCTGTTGTCTACTGAATCACAAGTTCTGGGAAA
CTCGATTTCTATCTTGTCTGCCAGGCGTTTTGAAGTTGATGCTTTACTTCGTCACTTAAAGGCACTGTTTCCTTCCAATTCTACTCAATGA
Protein sequenceShow/hide protein sequence
MHGVRLRGGAHFKCIHARRPFGKSSIIGKSSILPPTKLNLHSHSLVSHPTSSIEHSDTDSDEQVHVSLDTLVRRSSASKPCQEPSQTKSAKPSSSTYHPSGSPYPHLEPV
TTKPIPSDSIPFPNAPSSQNVSSSPISEPVFSSIPHVPSSSVPLSKPVCPDEFSIPSHELRAYLSQSSPSPPLSPEVVASELTGGSLRVWPSNGSIFVISLSVKYVILHK
VGIANWFPSLHASSVLAALASFLYQIGTGDQVDVGSFILSQLLKHVGSFGVKISIPFPLLLSSLLLHQHSGILLVSNAPGLAPKTLSLRYRLFQGSHASDLAPFDQPSSG
PSSTEHFDIPSTGLLIPSSLASRIFDLLSTESQVLGNSISILSARRFEVDALLRHLKALFPSNSTQ