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PI0027539 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027539
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPol protein
Genome locationchr11:14521094..14521333
RNA-Seq ExpressionPI0027539
SyntenyPI0027539
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046636.1 pol protein [Cucumis melo var. makuwa]1.4e-3186.08Show/hide
Query:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
        MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
KAA0053953.1 pol protein [Cucumis melo var. makuwa]1.4e-3186.08Show/hide
Query:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
        MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
KAA0056504.1 pol protein [Cucumis melo var. makuwa]1.4e-3186.08Show/hide
Query:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
        MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
KAA0062529.1 pol protein [Cucumis melo var. makuwa]1.4e-3187.18Show/hide
Query:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFE
        MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEEATWEREDDMR+ +PELFE
Subjt:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFE
KAA0067779.1 pol protein [Cucumis melo var. makuwa]1.4e-3186.08Show/hide
Query:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
        MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
TrEMBL top hitse value%identityAlignment
A0A5A7TQM9 Pol protein6.8e-3286.08Show/hide
Query:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
        MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
A0A5A7UAA8 Reverse transcriptase6.8e-3286.08Show/hide
Query:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
        MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
A0A5A7V8Y0 Pol protein6.8e-3286.08Show/hide
Query:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
        MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
A0A5A7VA30 Pol protein6.8e-3287.18Show/hide
Query:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFE
        MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEEATWEREDDMR+ +PELFE
Subjt:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFE
A0A5A7VRK1 Pol protein6.8e-3286.08Show/hide
Query:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
        MLRKYV DPSHV+DYEPL IDE+LSYVE PVE+LAREVKTLRNKEIPLVK+LWRNHRVEEATWEREDDMR+ +PELFE+
Subjt:  MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAGGAAATACGTGGCTGACCCATCTCATGTTTTGGATTACGAGCCTTTGGCCATTGACGAGGATTTGAGTTATGTTGAGCATCCAGTTGAGATCTTGGCCAGAGA
GGTTAAGACGCTTCGTAACAAAGAGATTCCGTTGGTGAAGATCCTTTGGCGCAACCACCGAGTAGAAGAAGCCACTTGGGAGCGAGAGGATGACATGAGAGCTAGTCATC
CAGAGTTATTCGAAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAAGGAAATACGTGGCTGACCCATCTCATGTTTTGGATTACGAGCCTTTGGCCATTGACGAGGATTTGAGTTATGTTGAGCATCCAGTTGAGATCTTGGCCAGAGA
GGTTAAGACGCTTCGTAACAAAGAGATTCCGTTGGTGAAGATCCTTTGGCGCAACCACCGAGTAGAAGAAGCCACTTGGGAGCGAGAGGATGACATGAGAGCTAGTCATC
CAGAGTTATTCGAAGATTAG
Protein sequenceShow/hide protein sequence
MLRKYVADPSHVLDYEPLAIDEDLSYVEHPVEILAREVKTLRNKEIPLVKILWRNHRVEEATWEREDDMRASHPELFED