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PI0027540 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027540
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:3276801..3277136
RNA-Seq ExpressionPI0027540
SyntenyPI0027540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575236.1 hypothetical protein SDJN03_25875, partial [Cucurbita argyrosperma subsp. sororia]2.3e-1648.11Show/hide
Query:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ
        MF FILD+ H   +A+ ++A +  +  LK S E  SIM + +P   C IA+QL PP+F Q Y+C  LHYSWI I+  FP M D  R GFSSL+FSF    
Subjt:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ

Query:  HADLTF
         A+L F
Subjt:  HADLTF

KGN45638.2 hypothetical protein Csa_005465, partial [Cucumis sativus]6.5e-5192.73Show/hide
Query:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ
        MFVFILDEIH+FVDAVS LAGLGYVFNLK SPEMFSIMANPTPSP CTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMF  ER GFSSLTFSFADS 
Subjt:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ

Query:  HADLTFCSRD
        HADLTFCSRD
Subjt:  HADLTFCSRD

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-5191.89Show/hide
Query:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ
        MFVFIL+EIH+FVDAVS+LAGLGYVFNLK SPEMFSIMANPTPSP CTIALQLFPPFFNQQYSCQQLHYSWIYIN FFPEMFD ER GFSSLTFSFADS 
Subjt:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ

Query:  HADLTFCSRDG
        HADLTFCSRDG
Subjt:  HADLTFCSRDG

WP_217833378.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]2.9e-2782.89Show/hide
Query:  ILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPE
        +LDEIH FVDA+SILAGL YVF+LK SP+MFSIM N TPS  CTIALQLFPPFFNQ YSCQQLHYSWIYIN FFPE
Subjt:  ILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPE

XP_023548336.1 uncharacterized protein LOC111807004 [Cucurbita pepo subsp. pepo]1.5e-1554.17Show/hide
Query:  IHNFVDAVSILA-GLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQHAD
        +H+ VDA S+LA     +F++K SP MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D
Subjt:  IHNFVDAVSILA-GLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQHAD

TrEMBL top hitse value%identityAlignment
A0A0A0K833 Uncharacterized protein6.3e-5292.79Show/hide
Query:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ
        MFVFILDEIH+FVDAVS LAGLGYVFNLK SPEMFSIMANPTPSP CTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMF  ER GFSSLTFSFADS 
Subjt:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ

Query:  HADLTFCSRDG
        HADLTFCSRDG
Subjt:  HADLTFCSRDG

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein1.8e-5191.89Show/hide
Query:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ
        MFVFIL+EIH+FVDAVS+LAGLGYVFNLK SPEMFSIMANPTPSP CTIALQLFPPFFNQQYSCQQLHYSWIYIN FFPEMFD ER GFSSLTFSFADS 
Subjt:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ

Query:  HADLTFCSRDG
        HADLTFCSRDG
Subjt:  HADLTFCSRDG

A0A6J1H4N0 uncharacterized protein LOC1114600093.6e-1553.12Show/hide
Query:  IHNFVDAVSILA-GLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQHAD
        +H+ VDA S+LA     +F++K SP MFSIMA  TPS  C I LQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D
Subjt:  IHNFVDAVSILA-GLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQHAD

A0A6J1KWL1 uncharacterized protein LOC1114988889.6e-1654.17Show/hide
Query:  IHNFVDAVSILA-GLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQHAD
        +H+ VDA S+LA     +F++K SP MFSIMA  TPS  C IALQL P FFN  Y C QLHY +IYI  F+  M + ER GFSSLTF+F +    D
Subjt:  IHNFVDAVSILA-GLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQHAD

A0A6J1L2R2 uncharacterized protein LOC1114993086.4e-1238.74Show/hide
Query:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ
        +F F+L+++ + VDA S++A    + ++K S EMF+IMA+  P+    IAL L+P FF+ +Y C +L  SW ++ + FP M D E  GF+SL+F+    +
Subjt:  MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQ

Query:  HADLTFCSRDG
         A+L F + +G
Subjt:  HADLTFCSRDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGTCTTCATACTCGACGAAATCCACAACTTCGTCGATGCCGTCTCCATCCTCGCCGGGCTTGGCTACGTATTCAATCTTAAATCCTCACCTGAAATGTTCTCAAT
AATGGCCAACCCCACACCTTCCCCTTGTTGTACCATAGCCCTTCAACTATTCCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACA
TCAACCACTTTTTCCCCGAAATGTTTGATTCCGAACGACCCGGTTTTTCTTCACTCACTTTCTCTTTCGCAGATTCGCAACATGCCGACCTCACATTTTGCAGTCGTGAT
GGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCGTCTTCATACTCGACGAAATCCACAACTTCGTCGATGCCGTCTCCATCCTCGCCGGGCTTGGCTACGTATTCAATCTTAAATCCTCACCTGAAATGTTCTCAAT
AATGGCCAACCCCACACCTTCCCCTTGTTGTACCATAGCCCTTCAACTATTCCCTCCATTCTTCAATCAACAATATTCCTGCCAACAACTTCACTACTCATGGATTTACA
TCAACCACTTTTTCCCCGAAATGTTTGATTCCGAACGACCCGGTTTTTCTTCACTCACTTTCTCTTTCGCAGATTCGCAACATGCCGACCTCACATTTTGCAGTCGTGAT
GGTTAG
Protein sequenceShow/hide protein sequence
MFVFILDEIHNFVDAVSILAGLGYVFNLKSSPEMFSIMANPTPSPCCTIALQLFPPFFNQQYSCQQLHYSWIYINHFFPEMFDSERPGFSSLTFSFADSQHADLTFCSRD
G