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PI0027545 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027545
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:9284227..9284822
RNA-Seq ExpressionPI0027545
SyntenyPI0027545
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047075.1 retrotransposon protein [Cucumis melo var. makuwa]6.5e-5066.01Show/hide
Query:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV
        +PG NI A+TI  RIK MKR F A++EMRGP+CSGFGWNDE KCI+ EK L+D WVKSHP  K LLNKSF HYD+L YVFGKDRATGGRAE+F D+GSN 
Subjt:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV

Query:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEE
         AGYD F A    D  F  MYS GL+MSPDD+M T + R+SE R  SSGSK +
Subjt:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEE

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-5362.96Show/hide
Query:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV
        +P  N+ A+TI  RIK +KR F AI EMRGP+CSGFGWNDE KCI+AEK ++D WV+SHPA K LLNKSFPHYD+L YVF KD ATGGRAE+FADVGSN 
Subjt:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV

Query:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEETGRADVEGG
          GYD F A   +D +F  MYS+GL+MSPD++MGT + R+SEGR  SSGSK++ G + ++ G
Subjt:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEETGRADVEGG

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-5168.21Show/hide
Query:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV
        +PG NI A+TI  RIK MKR F A+++MR P+CSGFGWNDE KCIIAEK ++D WVKSHPA K LLNKSF HYD+L YVFGKDRATGGRAE+FAD+GSN 
Subjt:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV

Query:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSK
         AGYD F A    D +FP MYS GL+MSPDD+M T + R+SE R  SSGSK
Subjt:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSK

KAA0064022.1 retrotransposon protein [Cucumis melo var. makuwa]5.0e-5065.61Show/hide
Query:  MPGHNIMATT-IGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSN
        +PG  + ATT I CRIKT+KR FQAI+EMRGP+CSGFGWNDE KCI+AEK L+D+WV+SHPA K LLNKSFP+YD+L YVFG+DRATG  AETFADVGSN
Subjt:  MPGHNIMATT-IGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSN

Query:  -VSAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEETG
            GYD F   D N+ +FP +YSQG+D+S DD+  +   R SEGR GSSGSK + G
Subjt:  -VSAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEETG

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-5066.67Show/hide
Query:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV
        +PG NI A+TI  RIK MKR F A++EMRGP+CSGFGWNDE KCI+ EK L+D WVKSHPA K LLNKSF HYD+L YVFGKDRATGGRAE+FAD+GSN 
Subjt:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV

Query:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEE
          GYD   A    D +FP MYS GL+MSPDD+M T + R+SE R  SSGSK +
Subjt:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEE

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein3.1e-5362.96Show/hide
Query:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV
        +P  N+ A+TI  RIK +KR F AI EMRGP+CSGFGWNDE KCI+AEK ++D WV+SHPA K LLNKSFPHYD+L YVF KD ATGGRAE+FADVGSN 
Subjt:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV

Query:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEETGRADVEGG
          GYD F A   +D +F  MYS+GL+MSPD++MGT + R+SEGR  SSGSK++ G + ++ G
Subjt:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEETGRADVEGG

A0A5A7U098 Retrotransposon protein3.2e-5066.01Show/hide
Query:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV
        +PG NI A+TI  RIK MKR F A++EMRGP+CSGFGWNDE KCI+ EK L+D WVKSHP  K LLNKSF HYD+L YVFGKDRATGGRAE+F D+GSN 
Subjt:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV

Query:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEE
         AGYD F A    D  F  MYS GL+MSPDD+M T + R+SE R  SSGSK +
Subjt:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEE

A0A5A7U4M2 Retrotransposon protein1.7e-5168.21Show/hide
Query:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV
        +PG NI A+TI  RIK MKR F A+++MR P+CSGFGWNDE KCIIAEK ++D WVKSHPA K LLNKSF HYD+L YVFGKDRATGGRAE+FAD+GSN 
Subjt:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV

Query:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSK
         AGYD F A    D +FP MYS GL+MSPDD+M T + R+SE R  SSGSK
Subjt:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSK

A0A5A7V6Q9 Retrotransposon protein2.4e-5065.61Show/hide
Query:  MPGHNIMATT-IGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSN
        +PG  + ATT I CRIKT+KR FQAI+EMRGP+CSGFGWNDE KCI+AEK L+D+WV+SHPA K LLNKSFP+YD+L YVFG+DRATG  AETFADVGSN
Subjt:  MPGHNIMATT-IGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSN

Query:  -VSAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEETG
            GYD F   D N+ +FP +YSQG+D+S DD+  +   R SEGR GSSGSK + G
Subjt:  -VSAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEETG

A0A5D3C1M0 Retrotransposon protein6.4e-5166.67Show/hide
Query:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV
        +PG NI A+TI  RIK MKR F A++EMRGP+CSGFGWNDE KCI+ EK L+D WVKSHPA K LLNKSF HYD+L YVFGKDRATGGRAE+FAD+GSN 
Subjt:  MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNV

Query:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEE
          GYD   A    D +FP MYS GL+MSPDD+M T + R+SE R  SSGSK +
Subjt:  SAGYDGFPAYDENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein1.0e-0834.15Show/hide
Query:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFAD
        R+K +K  +Q+  +++  S SGFGW+ E K   A   ++  ++K+HP  K +  +S  H++DL  +FG   ATG  A   +D
Subjt:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFAD

AT2G24960.1 unknown protein2.0e-0436.96Show/hide
Query:  GFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVF
        GF W++    I A+  ++DS++K HP  +    KS P Y+DL  +F
Subjt:  GFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVF

AT2G24960.2 unknown protein2.5e-0727.45Show/hide
Query:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATG---GRAETF-----ADVGSNVSAGYD
        R K ++R +  I  +     +GF W+     +IA+ +++++++++HP  +    K+ P Y +LC++FGK+ + G     A+ F       V  N S   D
Subjt:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATG---GRAETF-----ADVGSNVSAGYD

Query:  GF
        GF
Subjt:  GF

AT4G02210.1 unknown protein4.3e-0731.34Show/hide
Query:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVF
        R KT++  F++++ +      GF W+D  + ++A+  ++D ++K HP ++    KS P Y DLC V+
Subjt:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVF

AT4G02210.2 unknown protein4.3e-0731.34Show/hide
Query:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVF
        R KT++  F++++ +      GF W+D  + ++A+  ++D ++K HP ++    KS P Y DLC V+
Subjt:  RIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGGACATAACATAATGGCTACGACAATAGGTTGTCGAATCAAGACTATGAAAAGAGCATTCCAAGCGATATCTGAAATGAGGGGCCCATCGTGTAGTGGGTTCGG
TTGGAACGATGAGCTCAAATGCATCATTGCCGAGAAAAACTTGTATGACAGTTGGGTGAAGAGTCATCCAGCCACGAAGGACCTCCTAAACAAATCCTTTCCCCATTACG
ACGACCTTTGCTACGTCTTTGGAAAAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTTGCCGATGTTGGGTCGAACGTGTCTGCAGGATACGATGGATTTCCCGCTTAT
GACGAGAACGATATGGAGTTCCCGACGATGTACAGTCAGGGACTAGACATGTCACCTGACGACATAATGGGTACAGGATCTGGTCGGTTATCTGAGGGTAGGGCTGGTTC
GAGTGGTTCGAAAGAGGAAACGGGGAGGGCAGACGTTGAAGGTGGCAAAAATTATTCGCAGTGGCATGGAATATGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGGACATAACATAATGGCTACGACAATAGGTTGTCGAATCAAGACTATGAAAAGAGCATTCCAAGCGATATCTGAAATGAGGGGCCCATCGTGTAGTGGGTTCGG
TTGGAACGATGAGCTCAAATGCATCATTGCCGAGAAAAACTTGTATGACAGTTGGGTGAAGAGTCATCCAGCCACGAAGGACCTCCTAAACAAATCCTTTCCCCATTACG
ACGACCTTTGCTACGTCTTTGGAAAAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTTGCCGATGTTGGGTCGAACGTGTCTGCAGGATACGATGGATTTCCCGCTTAT
GACGAGAACGATATGGAGTTCCCGACGATGTACAGTCAGGGACTAGACATGTCACCTGACGACATAATGGGTACAGGATCTGGTCGGTTATCTGAGGGTAGGGCTGGTTC
GAGTGGTTCGAAAGAGGAAACGGGGAGGGCAGACGTTGAAGGTGGCAAAAATTATTCGCAGTGGCATGGAATATGCTAA
Protein sequenceShow/hide protein sequence
MPGHNIMATTIGCRIKTMKRAFQAISEMRGPSCSGFGWNDELKCIIAEKNLYDSWVKSHPATKDLLNKSFPHYDDLCYVFGKDRATGGRAETFADVGSNVSAGYDGFPAY
DENDMEFPTMYSQGLDMSPDDIMGTGSGRLSEGRAGSSGSKEETGRADVEGGKNYSQWHGIC