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PI0027565 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027565
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:18644574..18644938
RNA-Seq ExpressionPI0027565
SyntenyPI0027565
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051864.1 retrotransposon protein [Cucumis melo var. makuwa]8.9e-3369.89Show/hide
Query:  GPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMYI
        GP YS F WNDELKCII EKD++D+WVKSH   KGLLN  FPHYD+L Y+FGRD  + GRVETFA+VGSNVP  Y GFPADD NDM  P+M+I
Subjt:  GPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMYI

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]3.7e-3167.37Show/hide
Query:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNG-FPADDRNDMGFPTMY
        MRGP  SGF WN+E +CIIAE+DL+D+WVKSHPATKGLL+K FP+YDDL YVFG+DRA G R ETF DVGSNVP  +N   P  D +D   PTMY
Subjt:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNG-FPADDRNDMGFPTMY

XP_008466949.1 PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo]4.9e-3165.96Show/hide
Query:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMY
        MRGP  SGF WNDE KCI+AEK+++D+WVKSHP  KGLLNK F HYD+L YVFG+DRA GGR E+FAD+GSN P  Y+ F AD   D  FP MY
Subjt:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMY

XP_031742657.1 uncharacterized protein LOC116404426 [Cucumis sativus]6.8e-3368.82Show/hide
Query:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTM
        MRGP  SGF WND+ KCIIAEK+ +DNWV+SHPA KGLLNKPFP+YD   YVFG+DRA+G  VETFADVGSNVP  +  FP  D+NDM  P+M
Subjt:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTM

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]2.6e-3267.74Show/hide
Query:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTM
        MRGP   GF WND++KCI+AEK+L+DNWV+SHPA KGLLNK FP+YD+L YVFG+DRA+G   ETFADVGSNVP  +  FP  D NDM FP+M
Subjt:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTM

TrEMBL top hitse value%identityAlignment
A0A1S3CTN6 uncharacterized protein LOC1035043322.4e-3165.96Show/hide
Query:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMY
        MRGP  SGF WNDE KCI+AEK+++D+WVKSHP  KGLLNK F HYD+L YVFG+DRA GGR E+FAD+GSN P  Y+ F AD   D  FP MY
Subjt:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMY

A0A5A7U4M2 Retrotransposon protein4.0e-3167.02Show/hide
Query:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMY
        MR P  SGF WNDE KCIIAEK+++D+WVKSHPA KGLLNK F HYD+L YVFG+DRA GGR E+FAD+GSN P  Y+ F AD   D  FP MY
Subjt:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMY

A0A5A7U941 Retrotransposon protein4.3e-3369.89Show/hide
Query:  GPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMYI
        GP YS F WNDELKCII EKD++D+WVKSH   KGLLN  FPHYD+L Y+FGRD  + GRVETFA+VGSNVP  Y GFPADD NDM  P+M+I
Subjt:  GPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMYI

A0A5D3CWJ7 Retrotransposon protein6.9e-3164.89Show/hide
Query:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMY
        MRGP  SGF WNDE KCI+ EK+++D+WVKSHP  KGLLNK FPHYD+  YVFG+DRA GGR ++FADVGSN P  Y+ F AD   D  FP MY
Subjt:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMY

A0A5D3DG22 Retrotransposon protein1.8e-3167.37Show/hide
Query:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNG-FPADDRNDMGFPTMY
        MRGP  SGF WN+E +CIIAE+DL+D+WVKSHPATKGLL+K FP+YDDL YVFG+DRA G R ETF DVGSNVP  +N   P  D +D   PTMY
Subjt:  MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNG-FPADDRNDMGFPTMY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein6.4e-0529.09Show/hide
Query:  YSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIG
        + GF W+   + +I +  L+  ++K+HP  +    KP  ++ DLC ++G   A G
Subjt:  YSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIG

AT2G24960.2 unknown protein4.8e-0830Show/hide
Query:  SGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGE
        +GFSW+     +IA+ D+++ ++++HP  +    K  P Y +LC++FG++ +  GR    A      P E
Subjt:  SGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGE

AT4G02210.1 unknown protein3.4e-0629.79Show/hide
Query:  GFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFG
        GF+W++E + + A+ +++ +++K+H   +  + +P P+Y DLC + G
Subjt:  GFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFG

AT4G02210.2 unknown protein3.4e-0629.79Show/hide
Query:  GFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFG
        GF+W++E + + A+ +++ +++K+H   +  + +P P+Y DLC + G
Subjt:  GFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCCCATTGTATAGTGGGTTCAGTTGGAACGATGAGCTCAAATGCATCATTGCCGAGAAAGACTTGTACGACAATTGGGTGAAGAGTCATCCAGCCACGAAGGG
CCTCCTAAACAAACCATTTCCTCATTACGACGACCTATGCTACGTATTTGGAAGAGATCGTGCAATAGGAGGGCGTGTTGAAACCTTTGCCGATGTTGGGTCCAACGTGC
CTGGAGAGTACAATGGATTCCCTGCTGACGACAGGAACGATATGGGGTTCCCCACGATGTACATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCCCATTGTATAGTGGGTTCAGTTGGAACGATGAGCTCAAATGCATCATTGCCGAGAAAGACTTGTACGACAATTGGGTGAAGAGTCATCCAGCCACGAAGGG
CCTCCTAAACAAACCATTTCCTCATTACGACGACCTATGCTACGTATTTGGAAGAGATCGTGCAATAGGAGGGCGTGTTGAAACCTTTGCCGATGTTGGGTCCAACGTGC
CTGGAGAGTACAATGGATTCCCTGCTGACGACAGGAACGATATGGGGTTCCCCACGATGTACATTTAG
Protein sequenceShow/hide protein sequence
MRGPLYSGFSWNDELKCIIAEKDLYDNWVKSHPATKGLLNKPFPHYDDLCYVFGRDRAIGGRVETFADVGSNVPGEYNGFPADDRNDMGFPTMYI