; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027578 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027578
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr06:21776157..21777029
RNA-Seq ExpressionPI0027578
SyntenyPI0027578
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-11876.21Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        MVDSGATHNFITE EA+RL+LRWEKD G+MKAVNS ALPI+G+VKRTMIRLGGW+G  DFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITG TP+V
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA
        VQTD+                                       +PK+I+ VLEKY DVMPDSLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRM PPELA
Subjt:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA

Query:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        EL+KQLDELL+AGFIRPAKAPY A VLFQ+KKDGSLRLCIDYRALNKLTV N+YPLPIITDLFD LHGAKYFSKLDLRSGYYQVRIAEGD
Subjt:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-11876.21Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        MVDSGATHNFITE EA+RL+LRWEKD G+MKAVNS ALPI+G+VKRTMIRLGGW+G  DFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITG TP+V
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA
        VQTD+                                       +PK+I+ VLEKY DVMPDSLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRM PPELA
Subjt:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA

Query:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        EL+KQLDELL+AGFIRPAKAPY A VLFQ+KKDGSLRLCIDYRALNKLTV N+YPLPIITDLFD LHGAKYFSKLDLRSGYYQVRIAEGD
Subjt:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

KAA0063412.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-11876.21Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        MVDSGATHNFITE EA+RL+LRWEKD G+MKAVNS ALPI+G+VKRTMIRLGGW+G  DFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITG TP+V
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA
        VQTD+                                       +PK+I+ VLEKY DVMPDSLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRM PPELA
Subjt:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA

Query:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        EL+KQLDELL+AGFIRPAKAPY A VLFQ+KKDGSLRLCIDYRALNKLTV N+YPLPIITDLFD LHGAKYFSKLDLRSGYYQVRIAEGD
Subjt:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-11876.21Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        MVDSGATHNFITE EA+RL+LRWEKD G+MKAVNS ALPI+G+VKRTMIRLGGW+G  DFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITG TP+V
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA
        VQTD+                                       +PK+I+ VLEKY DVMPDSLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRM PPELA
Subjt:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA

Query:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        EL+KQLDELL+AGFIRPAKAPY A VLFQ+KKDGSLRLCIDYRALNKLTV N+YPLPIITDLFD LHGAKYFSKLDLRSGYYQVRIAEGD
Subjt:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]7.4e-11976.55Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        MVDSGATHNFITE+EA+RL+LRWEKD G+MKAVNS ALPI+G+VKRTMIRLGGW+G  DFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITG TP+V
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA
        VQTD+                                       +PK+I+ VLEKY DVMPDSLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRM PPELA
Subjt:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA

Query:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        EL+KQLDELL+AGFIRPAKAPY A VLFQKKKDGSLRLCIDYRALNKLTV N+YPLPIITDLFD LHGAKYFSKLDLRSGYYQVRIAEGD
Subjt:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase1.4e-11876.21Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        MVDSGATHNFITE EA+RL+LRWEKD G+MKAVNS ALPI+G+VKRTMIRLGGW+G  DFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITG TP+V
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA
        VQTD+                                       +PK+I+ VLEKY DVMPDSLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRM PPELA
Subjt:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA

Query:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        EL+KQLDELL+AGFIRPAKAPY A VLFQ+KKDGSLRLCIDYRALNKLTV N+YPLPIITDLFD LHGAKYFSKLDLRSGYYQVRIAEGD
Subjt:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

A0A5D3B7E7 Reverse transcriptase1.4e-11876.21Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        MVDSGATHNFITE EA+RL+LRWEKD G+MKAVNS ALPI+G+VKRTMIRLGGW+G  DFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITG TP+V
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA
        VQTD+                                       +PK+I+ VLEKY DVMPDSLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRM PPELA
Subjt:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA

Query:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        EL+KQLDELL+AGFIRPAKAPY A VLFQ+KKDGSLRLCIDYRALNKLTV N+YPLPIITDLFD LHGAKYFSKLDLRSGYYQVRIAEGD
Subjt:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

A0A5D3BRZ6 Reverse transcriptase1.4e-11876.21Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        MVDSGATHNFITE EA+RL+LRWEKD G+MKAVNS ALPI+G+VKRTMIRLGGW+G  DFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITG TP+V
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA
        VQTD+                                       +PK+I+ VLEKY DVMPDSLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRM PPELA
Subjt:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA

Query:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        EL+KQLDELL+AGFIRPAKAPY A VLFQ+KKDGSLRLCIDYRALNKLTV N+YPLPIITDLFD LHGAKYFSKLDLRSGYYQVRIAEGD
Subjt:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

A0A5D3C4R1 Reverse transcriptase1.4e-11876.21Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        MVDSGATHNFITE EA+RL+LRWEKD G+MKAVNS ALPI+G+VKRTMIRLGGW+G  DFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITG TP+V
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA
        VQTD+                                       +PK+I+ VLEKY DVMPDSLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRM PPELA
Subjt:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA

Query:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        EL+KQLDELL+AGFIRPAKAPY A VLFQ+KKDGSLRLCIDYRALNKLTV N+YPLPIITDLFD LHGAKYFSKLDLRSGYYQVRIAEGD
Subjt:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

A0A5D3C9P8 Reverse transcriptase3.6e-11976.55Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        MVDSGATHNFITE+EA+RL+LRWEKD G+MKAVNS ALPI+G+VKRTMIRLGGW+G  DFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITG TP+V
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA
        VQTD+                                       +PK+I+ VLEKY DVMPDSLPK+LPPRRMIDHEIEL+PGAKPPAKNAYRM PPELA
Subjt:  VQTDI---------------------------------------LPKDILCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELA

Query:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        EL+KQLDELL+AGFIRPAKAPY A VLFQKKKDGSLRLCIDYRALNKLTV N+YPLPIITDLFD LHGAKYFSKLDLRSGYYQVRIAEGD
Subjt:  ELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.5e-2127.67Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        ++D+GA  N ITE   R   L     +  +         I     +  I L G +  T+F+VVK       +    L ++ +        L        +
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDILPKDILCVLEKYNDVMPDSLPKTLP-PRRMIDHEIELI-PGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLR
        V+   LP     + +++ D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L +G IR +KA     V+F  KK+G+LR
Subjt:  VQTDILPKDILCVLEKYNDVMPDSLPKTLP-PRRMIDHEIELI-PGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLR

Query:  LCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        + +DY+ LNK    N YPLP+I  L   + G+  F+KLDL+S Y+ +R+ +GD
Subjt:  LCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

P0CT35 Transposon Tf2-2 polyprotein2.5e-2127.67Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        ++D+GA  N ITE   R   L     +  +         I     +  I L G +  T+F+VVK       +    L ++ +        L        +
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDILPKDILCVLEKYNDVMPDSLPKTLP-PRRMIDHEIELI-PGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLR
        V+   LP     + +++ D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L +G IR +KA     V+F  KK+G+LR
Subjt:  VQTDILPKDILCVLEKYNDVMPDSLPKTLP-PRRMIDHEIELI-PGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLR

Query:  LCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        + +DY+ LNK    N YPLP+I  L   + G+  F+KLDL+S Y+ +R+ +GD
Subjt:  LCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

P0CT41 Transposon Tf2-12 polyprotein2.5e-2127.67Show/hide
Query:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV
        ++D+GA  N ITE   R   L     +  +         I     +  I L G +  T+F+VVK       +    L ++ +        L        +
Subjt:  MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTV

Query:  VQTDILPKDILCVLEKYNDVMPDSLPKTLP-PRRMIDHEIELI-PGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLR
        V+   LP     + +++ D+  ++  + LP P + ++ E+EL     + P +N Y + P ++  +  ++++ L +G IR +KA     V+F  KK+G+LR
Subjt:  VQTDILPKDILCVLEKYNDVMPDSLPKTLP-PRRMIDHEIELI-PGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLR

Query:  LCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        + +DY+ LNK    N YPLP+I  L   + G+  F+KLDL+S Y+ +R+ +GD
Subjt:  LCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.8e-2236.88Show/hide
Query:  TDILPKDILCVL-----EKYNDVMPDSLP------KTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQK
        TD   KD  C L     +KY +++ + LP        +P    + H+IE+ PGA+ P    Y +T     E+ K + +LL   FI P+K+P  + V+   
Subjt:  TDILPKDILCVL-----EKYNDVMPDSLP------KTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQK

Query:  KKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        KKDG+ RLC+DYR LNK T+ + +PLP I +L   +  A+ F+ LDL SGY+Q+ +   D
Subjt:  KKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.8e-2236.88Show/hide
Query:  TDILPKDILCVL-----EKYNDVMPDSLP------KTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQK
        TD   KD  C L     +KY +++ + LP        +P    + H+IE+ PGA+ P    Y +T     E+ K + +LL   FI P+K+P  + V+   
Subjt:  TDILPKDILCVL-----EKYNDVMPDSLP------KTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQK

Query:  KKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD
        KKDG+ RLC+DYR LNK T+ + +PLP I +L   +  A+ F+ LDL SGY+Q+ +   D
Subjt:  KKDGSLRLCIDYRALNKLTVCNRYPLPIITDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGACTCTGGTGCGACCCACAACTTCATTACCGAGTCAGAAGCCCGCCGATTAAGCCTCCGCTGGGAGAAAGACACGGGAAAGATGAAGGCTGTAAATTCTGTTGC
CTTACCTATCGTCGGTGTGGTAAAAAGAACGATGATAAGGTTGGGGGGATGGAATGGCCATACAGACTTCGTGGTTGTCAAGATGGATGACTTCGACGTAGTATTGGGAA
TGGAATTTTTGCTAGAACATCAAGTGATACCGATGCCTCTAGCCAAATGCTTAGTGATAACGGGGTCCACTCCCACCGTTGTACAAACAGACATTCTTCCGAAAGACATT
CTGTGTGTCTTAGAGAAGTATAACGACGTGATGCCTGATAGTTTGCCCAAGACTCTACCGCCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACC
GCCTGCAAAGAATGCTTATCGTATGACACCACCCGAGTTGGCAGAACTTCAGAAACAGTTAGACGAGTTGTTGAGTGCAGGATTCATTAGGCCTGCAAAAGCTCCATATA
GGGCCCTGGTCCTTTTCCAAAAGAAGAAAGATGGAAGCTTACGTCTGTGCATCGACTATCGTGCATTGAATAAGCTCACAGTTTGCAATAGATACCCGCTCCCCATAATC
ACGGATCTTTTTGACAGCCTACATGGAGCGAAGTATTTCTCGAAATTGGATCTGCGATCGGGATACTATCAAGTAAGGATTGCCGAAGGGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGACTCTGGTGCGACCCACAACTTCATTACCGAGTCAGAAGCCCGCCGATTAAGCCTCCGCTGGGAGAAAGACACGGGAAAGATGAAGGCTGTAAATTCTGTTGC
CTTACCTATCGTCGGTGTGGTAAAAAGAACGATGATAAGGTTGGGGGGATGGAATGGCCATACAGACTTCGTGGTTGTCAAGATGGATGACTTCGACGTAGTATTGGGAA
TGGAATTTTTGCTAGAACATCAAGTGATACCGATGCCTCTAGCCAAATGCTTAGTGATAACGGGGTCCACTCCCACCGTTGTACAAACAGACATTCTTCCGAAAGACATT
CTGTGTGTCTTAGAGAAGTATAACGACGTGATGCCTGATAGTTTGCCCAAGACTCTACCGCCGAGGAGAATGATTGATCATGAGATTGAACTGATACCAGGGGCAAAACC
GCCTGCAAAGAATGCTTATCGTATGACACCACCCGAGTTGGCAGAACTTCAGAAACAGTTAGACGAGTTGTTGAGTGCAGGATTCATTAGGCCTGCAAAAGCTCCATATA
GGGCCCTGGTCCTTTTCCAAAAGAAGAAAGATGGAAGCTTACGTCTGTGCATCGACTATCGTGCATTGAATAAGCTCACAGTTTGCAATAGATACCCGCTCCCCATAATC
ACGGATCTTTTTGACAGCCTACATGGAGCGAAGTATTTCTCGAAATTGGATCTGCGATCGGGATACTATCAAGTAAGGATTGCCGAAGGGGATTAA
Protein sequenceShow/hide protein sequence
MVDSGATHNFITESEARRLSLRWEKDTGKMKAVNSVALPIVGVVKRTMIRLGGWNGHTDFVVVKMDDFDVVLGMEFLLEHQVIPMPLAKCLVITGSTPTVVQTDILPKDI
LCVLEKYNDVMPDSLPKTLPPRRMIDHEIELIPGAKPPAKNAYRMTPPELAELQKQLDELLSAGFIRPAKAPYRALVLFQKKKDGSLRLCIDYRALNKLTVCNRYPLPII
TDLFDSLHGAKYFSKLDLRSGYYQVRIAEGD