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PI0027596 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027596
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:14246083..14247601
RNA-Seq ExpressionPI0027596
SyntenyPI0027596
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.6e-5571.92Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP ++E+VN++RKYDP+GNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK
        T AISK++GKGKLPAQPD+ANVSAISLRSGKI +TP + EK +  K
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK

KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-5571.23Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP ++E+VN++R+YDP+GNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRKRKK
        ISK++GKGKL AQ DHANVSAISLRSGKI +TP + EK +  K+K+
Subjt:  ISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRKRKK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-5573.24Show/hide
Query:  KVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCP ++E+VN++R+YDPH NTYN GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK
        SK++GKGKLPAQPDHANVSAISLRSGKI +TP + EK +  K
Subjt:  SKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-5670.95Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKCP ++E++N++R+YDPHGNTYN+GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRKRK
        T AISK++GKGKLPAQPDHANVSAISLRSGKI +TP + EK +  K++
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRKRK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]9.6e-5670.55Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+G+PNDKCP ++E+VN++R+YDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ +MKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK
        T  ISK++GKGKLPAQPDH NVSAISLRSGKI +TP + EK +  K
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032914.6e-5670.55Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVCGL+G+PNDKCP ++E+VN++R+YDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ +MKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK
        T  ISK++GKGKLPAQPDH NVSAISLRSGKI +TP + EK +  K
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK

A0A5A7UID2 Retrotransposon gag protein1.8e-5571.23Show/hide
Query:  MKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA
        +KV KCGVCGL+GHPNDKCP ++E+VN++R+YDP+GNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT A
Subjt:  MKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNA

Query:  ISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRKRKK
        ISK++GKGKL AQ DHANVSAISLRSGKI +TP + EK +  K+K+
Subjt:  ISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRKRKK

A0A5D3CB46 Retrotransposon gag protein1.8e-5573.24Show/hide
Query:  KVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI
        KV KCGVCGL+GHPNDKCP ++E+VN++R+YDPH NTYN GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AI
Subjt:  KVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAI

Query:  SKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK
        SK++GKGKLPAQPDHANVSAISLRSGKI +TP + EK +  K
Subjt:  SKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK

A0A5D3CFE7 Retrotransposon gag protein7.1e-5770.95Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G   KV KCGVCGL+GHPNDKCP ++E++N++R+YDPHGNTYN+GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRKRK
        T AISK++GKGKLPAQPDHANVSAISLRSGKI +TP + EK +  K++
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRKRK

E5GBZ4 Retrotransposon gag protein7.9e-5671.92Show/hide
Query:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
        G  +KV KCGVC L+GHPNDKCP ++E+VN++RKYDP+GNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QL
Subjt:  GGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL

Query:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK
        T AISK++GKGKLPAQPD+ANVSAISLRSGKI +TP + EK +  K
Subjt:  TNAISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCAATCTTGTGGAAGAGGT
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGTCGGTTGGAGAGACAATCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAATTT
CATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCACTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCCGGAAACCCCTCCAAGCGA
TGAAAAGATGATAATAAGAAAAAGGAAGAAAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCAATCTTGTGGAAGAGGT
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTATAATGTCGGTTGGAGAGACAATCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAGCAATTT
CATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCACTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTGACCAAT
GCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCCGGAAACCCCTCCAAGCGA
TGAAAAGATGATAATAAGAAAAAGGAAGAAAATCTAG
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNMKVAKCGVCGLIGHPNDKCPNLVEEVNVIRKYDPHGNTYNVGWRDNPNLRWGNDAQRPAQAISSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTN
AISKLEGKGKLPAQPDHANVSAISLRSGKIPETPPSDEKMIIRKRKKI