; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027598 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027598
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr10:4343684..4344304
RNA-Seq ExpressionPI0027598
SyntenyPI0027598
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042123.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-4067.97Show/hide
Query:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQNQTFQSPMKNKGQKE
        KA +YILASMSD+LSKK E MVTARQIMDSL E+F Q SIQI+ EAIKYVYN RMKEDQS+REHVL+M+V FNV EMNGAV DE++Q+       KGQKE
Subjt:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQNQTFQSPMKNKGQKE

Query:  GEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAAKGKGRLR
        GEANVAHS+RF          APSSSG+KKIQK+KGGKGKG  V A+ KG+ +
Subjt:  GEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAAKGKGRLR

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-3657.38Show/hide
Query:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------
        KAR YILAS+S+VL+KKHESM+TAR+IMDSL EMF Q S QI+H+A+KY+YNARM E  SVREHVL+MMV FNVAEMNGAVIDE +              
Subjt:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------

Query:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA
                              QTF+S MK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G    +AA
Subjt:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-3657.38Show/hide
Query:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------
        KAR YILAS+S+VL+KKHESM+TAR+IMDSL EMF Q S QI+H+A+KY+YNARM E  SVREHVL+MMV FNVAEMNGAVIDE +              
Subjt:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------

Query:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA
                              QTF+S MK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G    +AA
Subjt:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA

TYK00843.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-3768.28Show/hide
Query:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQNQTFQSPMKNKGQKE
        KA +YILASMSD+LSKKHE MVTARQIMDS  E+F Q SIQI+ EAIKYVYNA MKE QSVREH LDM+V FNVAEMNGAVIDE++Q+       KGQK+
Subjt:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQNQTFQSPMKNKGQKE

Query:  GEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVA
        GEANVAH +RF          APSSSG++KIQK+KG KGKG  +A
Subjt:  GEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVA

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-3657.38Show/hide
Query:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------
        KAR YILAS+S+VL+KKHESM+TAR+IMDSL EMF Q S QI+H+A+KY+YNARM E  SVREHVL+MMV FNVAEMNGAVIDE +              
Subjt:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------

Query:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA
                              QTF+S MK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G    +AA
Subjt:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein5.2e-3757.38Show/hide
Query:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------
        KAR YILAS+S+VL+KKHESM+TAR+IMDSL EMF Q S QI+H+A+KY+YNARM E  SVREHVL+MMV FNVAEMNGAVIDE +              
Subjt:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------

Query:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA
                              QTF+S MK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G    +AA
Subjt:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA

A0A5A7TFX6 Gag/pol protein7.7e-4167.97Show/hide
Query:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQNQTFQSPMKNKGQKE
        KA +YILASMSD+LSKK E MVTARQIMDSL E+F Q SIQI+ EAIKYVYN RMKEDQS+REHVL+M+V FNV EMNGAV DE++Q+       KGQKE
Subjt:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQNQTFQSPMKNKGQKE

Query:  GEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAAKGKGRLR
        GEANVAHS+RF          APSSSG+KKIQK+KGGKGKG  V A+ KG+ +
Subjt:  GEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAAKGKGRLR

A0A5A7V4M1 Gag/pol protein5.2e-3757.38Show/hide
Query:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------
        KAR YILAS+S+VL+KKHESM+TAR+IMDSL EMF Q S QI+H+A+KY+YNARM E  SVREHVL+MMV FNVAEMNGAVIDE +              
Subjt:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------

Query:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA
                              QTF+S MK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G    +AA
Subjt:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA

A0A5D3BM47 Gag/pol protein8.0e-3868.28Show/hide
Query:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQNQTFQSPMKNKGQKE
        KA +YILASMSD+LSKKHE MVTARQIMDS  E+F Q SIQI+ EAIKYVYNA MKE QSVREH LDM+V FNVAEMNGAVIDE++Q+       KGQK+
Subjt:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQNQTFQSPMKNKGQKE

Query:  GEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVA
        GEANVAH +RF          APSSSG++KIQK+KG KGKG  +A
Subjt:  GEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVA

A0A5D3CPJ6 Gag/pol protein5.2e-3757.38Show/hide
Query:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------
        KAR YILAS+S+VL+KKHESM+TAR+IMDSL EMF Q S QI+H+A+KY+YNARM E  SVREHVL+MMV FNVAEMNGAVIDE +              
Subjt:  KARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQN--------------

Query:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA
                              QTF+S MK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKKGG+G    +AA
Subjt:  ----------------------QTFQSPMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCCCAGACTGTCAGGGATGCATATGACTGTTGGACAAAGGCCAATGAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGTAAGAAACATGAGTC
CATGGTCACTGCACGTCAGATCATGGACTCCCTCCATGAGATGTTTGAACAACTGTCCATTCAAATCCGACACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGG
AAGACCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAATGAACGGGGCAGTCATTGACGAGCAGAATCAAACTTTTCAGTCTCCTATG
AAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAA
AATTCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCTTGCTGTTGCTGCTAAGGGCAAGGGAAGGTTAAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATCCCAGACTGTCAGGGATGCATATGACTGTTGGACAAAGGCCAATGAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGTAAGAAACATGAGTC
CATGGTCACTGCACGTCAGATCATGGACTCCCTCCATGAGATGTTTGAACAACTGTCCATTCAAATCCGACACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGG
AAGACCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAATGAACGGGGCAGTCATTGACGAGCAGAATCAAACTTTTCAGTCTCCTATG
AAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAA
AATTCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCTTGCTGTTGCTGCTAAGGGCAAGGGAAGGTTAAGGTAG
Protein sequenceShow/hide protein sequence
MHPRLSGMHMTVGQRPMKARVYILASMSDVLSKKHESMVTARQIMDSLHEMFEQLSIQIRHEAIKYVYNARMKEDQSVREHVLDMMVQFNVAEMNGAVIDEQNQTFQSPM
KNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKGLAVAAKGKGRLR