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PI0027625 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027625
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr03:12730068..12731190
RNA-Seq ExpressionPI0027625
SyntenyPI0027625
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]8.1e-2549.32Show/hide
Query:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS
        +++G   GFF G  G   G  + P               +  Q F++HH CEKV+LTHLTFADDLMIF     L +  +   L++FGELSGL AN  K+S
Subjt:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS

Query:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI
        IFV GV++E  + LA  MGFA G LP+RYLG+PLL+GRL  +DCAPLI
Subjt:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI

KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]1.9e-2650.68Show/hide
Query:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS
        +++G   GFF G  G   G  + P               +P QGF++H CCEKV+LT LTFADDLMIF +     L  +  TL++FGEL GL ANLGK S
Subjt:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS

Query:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI
        IFV G  +E  + LA +MGF LG LP+RYL +PLL+GRL  SDCAPLI
Subjt:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI

KAA0062333.1 putative reverse transcriptase [Cucumis melo var. makuwa]1.6e-2550.68Show/hide
Query:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS
        +++G   GFF G  G   G  + P               +  Q F +HH CE V+L HLTFADDLMIF       L  +   L++FGELSGL  NL KNS
Subjt:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS

Query:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI
        +FV GV+SE  + LA SMGF LG LP+RYLG+PLLSGRL  SDCAPLI
Subjt:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]8.1e-2549.32Show/hide
Query:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS
        +++G   GFF G  G   G  + P               +  Q F++HH CEKV+LTHLTFADDLMIF     L +  +   L++FGELSGL AN  K+S
Subjt:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS

Query:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI
        IFV GV++E  + LA  MGFA G LP+RYLG+PLL+GRL  +DCAPLI
Subjt:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI

XP_031745551.1 uncharacterized protein LOC116405970 [Cucumis sativus]2.8e-2557.26Show/hide
Query:  RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNSIFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRL
        RP   +++H  CEKV LTHLTFA+DLMIF       L  +  T+R+FG+LSGL  NL K S+FVVGV+S+ V  L  S+GF L  LP+RYLG+PLLSGRL
Subjt:  RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNSIFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRL

Query:  CYSDCAPLISGLLVGFGLGRLEFY
          +DCA L + LLV F LG LEFY
Subjt:  CYSDCAPLISGLLVGFGLGRLEFY

TrEMBL top hitse value%identityAlignment
A0A5A7SPE5 Reverse transcriptase domain-containing protein3.9e-2549.32Show/hide
Query:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS
        +++G   GFF G  G   G  + P               +  Q F++HH CEKV+LTHLTFADDLMIF     L +  +   L++FGELSGL AN  K+S
Subjt:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS

Query:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI
        IFV GV++E  + LA  MGFA G LP+RYLG+PLL+GRL  +DCAPLI
Subjt:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI

A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein9.3e-2750.68Show/hide
Query:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS
        +++G   GFF G  G   G  + P               +P QGF++H CCEKV+LT LTFADDLMIF +     L  +  TL++FGEL GL ANLGK S
Subjt:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS

Query:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI
        IFV G  +E  + LA +MGF LG LP+RYL +PLL+GRL  SDCAPLI
Subjt:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI

A0A5A7TWG5 Reverse transcriptase domain-containing protein2.5e-2460.38Show/hide
Query:  QGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNSIFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYS
        Q F++HH CEKV+LTHLTFADDLMIF     L +  +   L++FGELSGL AN  K+SIFV GV++E  + LA  MGF  G L +RYLG+PLL+GRLC +
Subjt:  QGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNSIFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYS

Query:  DCAPLI
        DCAPLI
Subjt:  DCAPLI

A0A5A7V2L9 Putative reverse transcriptase7.9e-2650.68Show/hide
Query:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS
        +++G   GFF G  G   G  + P               +  Q F +HH CE V+L HLTFADDLMIF       L  +   L++FGELSGL  NL KNS
Subjt:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS

Query:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI
        +FV GV+SE  + LA SMGF LG LP+RYLG+PLLSGRL  SDCAPLI
Subjt:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI

A0A5D3DXE4 Reverse transcriptase domain-containing protein3.9e-2549.32Show/hide
Query:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS
        +++G   GFF G  G   G  + P               +  Q F++HH CEKV+LTHLTFADDLMIF     L +  +   L++FGELSGL AN  K+S
Subjt:  VLDGFSVGFFKGDGGGYHGTSVPP---------------RPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPL-VLCWTLRQFGELSGLVANLGKNS

Query:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI
        IFV GV++E  + LA  MGFA G LP+RYLG+PLL+GRL  +DCAPLI
Subjt:  IFVVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.7e-0430.61Show/hide
Query:  VVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLISGLLVGFG---------LGRLEFYLS---------LGDFSLCDRCCGDFDSL
        + GV       +  S  FA G LP+RYLG+PLL+ ++  SD  PL+  + V  G          GRL+   S         +  F L   C  + DS+
Subjt:  VVGVDSEAVTMLADSMGFALGTLPIRYLGIPLLSGRLCYSDCAPLISGLLVGFG---------LGRLEFYLS---------LGDFSLCDRCCGDFDSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGTAGTAAGGCTCCTGTTCTTGATGGTTTTTCGGTGGGGTTCTTCAAAGGAGATGGTGGGGGTTATCATGGTACTTCTGTTCCGCCTCGGCCCTCTCAGGGTTT
CAAGTATCATCATTGTTGTGAGAAAGTTCGTTTGACCCATTTGACCTTTGCTGATGATCTTATGATTTTTGTGCTGCTGACGCTACTTCCATTGGTTTTGTGTTGGACTC
TACGTCAGTTTGGGGAGTTATCAGGGTTGGTTGCTAATCTGGGGAAGAACTCTATATTTGTGGTGGGGGTTGACAGTGAGGCTGTTACTATGTTAGCGGATAGTATGGGA
TTTGCGCTGGGTACTCTGCCTATTCGTTACCTAGGTATTCCCTTACTCTCTGGTAGGCTGTGTTATTCGGATTGTGCGCCGCTCATCAGCGGATTACTAGTCGGATTCGG
TCTTGGTCGGCTAGAGTTTTATCTTTCGCTGGGAGACTTCAGCTTGTGCGATCGGTGTTGCGGAGATTTTGATTCGTTGAATCTACTCGAAAATATTCATAAAGTTCTAA
GTGTGCAGCTAAGGCGTCTAGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGTAGTAAGGCTCCTGTTCTTGATGGTTTTTCGGTGGGGTTCTTCAAAGGAGATGGTGGGGGTTATCATGGTACTTCTGTTCCGCCTCGGCCCTCTCAGGGTTT
CAAGTATCATCATTGTTGTGAGAAAGTTCGTTTGACCCATTTGACCTTTGCTGATGATCTTATGATTTTTGTGCTGCTGACGCTACTTCCATTGGTTTTGTGTTGGACTC
TACGTCAGTTTGGGGAGTTATCAGGGTTGGTTGCTAATCTGGGGAAGAACTCTATATTTGTGGTGGGGGTTGACAGTGAGGCTGTTACTATGTTAGCGGATAGTATGGGA
TTTGCGCTGGGTACTCTGCCTATTCGTTACCTAGGTATTCCCTTACTCTCTGGTAGGCTGTGTTATTCGGATTGTGCGCCGCTCATCAGCGGATTACTAGTCGGATTCGG
TCTTGGTCGGCTAGAGTTTTATCTTTCGCTGGGAGACTTCAGCTTGTGCGATCGGTGTTGCGGAGATTTTGATTCGTTGAATCTACTCGAAAATATTCATAAAGTTCTAA
GTGTGCAGCTAAGGCGTCTAGGCTAG
Protein sequenceShow/hide protein sequence
MDSSKAPVLDGFSVGFFKGDGGGYHGTSVPPRPSQGFKYHHCCEKVRLTHLTFADDLMIFVLLTLLPLVLCWTLRQFGELSGLVANLGKNSIFVVGVDSEAVTMLADSMG
FALGTLPIRYLGIPLLSGRLCYSDCAPLISGLLVGFGLGRLEFYLSLGDFSLCDRCCGDFDSLNLLENIHKVLSVQLRRLG