CuGenDBv2

Gene ID	PI0027631
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr07:6803048..6804834
RNA-Seq Expression	PI0027631
Synteny	PI0027631
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.1e-51

82.58

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Query:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        M S+GNTSKA+SDIGKRPNTRSRSRE QSSEDMPPF+VA+NIWE++S PPK GI+IKENP IDEH S SERS+EE+P PNIMS+MVTDVDTSEDRMAELE
Subjt:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES
        KKVNML+K VEERD+EI+ LKNHIESRDAAES
Subjt:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES

KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

8.0e-15

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Query:  MLLKAVEERDYEISLKNHIESRDAA---ESKGRSFATGSLIQFGSLEPVVIYSSSKVLQNNDIQTVYSKEEEKHVEDADEGWALVMRRKKHKQNFSKKES
        ++LK   ++  E+ L +  ++  AA   +S  R  A GSLIQFGSLEPVVIYSS + LQNND +T   KEEEK V++ +EGW LV  RKK KQ+FS+KES
Subjt:  MLLKAVEERDYEISLKNHIESRDAA---ESKGRSFATGSLIQFGSLEPVVIYSSSKVLQNNDIQTVYSKEEEKHVEDADEGWALVMRRKKHKQNFSKKES

KAA0031754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.1e-51

84.09

Show/hide

Query:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        M S+GNTSKA+SDIGKRPNTRSRSRE QSSEDMP FEVA+NIWE++S PPK GI+IKENP IDEH S SERS+EE+P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES
        KKVNML+KAVEERD+EI+ LKNHIESRDAAES
Subjt:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

2.4e-51

83.33

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Query:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        M S+GNTSKA+SDIGKRPNTRSRSRE QSSEDMPPF+VA+NIWE++S PPK GI+IKENP +DEH S SERS+EE+P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES
        KKVNML+KAVEERD+EI+ LKNHIESRDAAES
Subjt:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

1.1e-14

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Query:  MLLKAVEERDYEISLKNHIESRDAA---ESKGRSFATGSLIQFGSLEPVVIYSSSKVLQNNDIQTVYSKEEEKHVEDADEGWALVMRRKKHKQNFSKKES
        ++LK   ++  E+ L +  ++  AA   +S  R  A GSLIQFGSLEPVVIYSS + LQNND +    KEEEK V++ +EGW LV RRKK KQ+FS+KES
Subjt:  MLLKAVEERDYEISLKNHIESRDAA---ESKGRSFATGSLIQFGSLEPVVIYSSSKVLQNNDIQTVYSKEEEKHVEDADEGWALVMRRKKHKQNFSKKES

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

3.1e-51

83.33

Show/hide

Query:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        M S+GNTSKA+SDIGKRPNTRSRSRE QSSEDMPPFEV +NIWE++S PPK GI+IKENP IDEH S SERS+EE+P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES
        KKVNML+KAVEE+D+EI+ LKNHIESRDAAES
Subjt:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES

KAA0048375.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]

9.1e-51

83.33

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Query:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        M S+GNTSKA+ DIGKRPNTRSRSRE QSSEDMPPFEVA+NIWE++S PPK+GIIIKENP IDEH S S+RS+EE P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES
        KKVNML+KAVEERD+EI+ LKNHI+SRDAAES
Subjt:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SKR0 Ty3-gypsy retrotransposon protein

2.0e-51

82.58

Show/hide

Query:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        M S+GNTSKA+SDIGKRPNTRSRSRE QSSEDMPPF+VA+NIWE++S PPK GI+IKENP IDEH S SERS+EE+P PNIMS+MVTDVDTSEDRMAELE
Subjt:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES
        KKVNML+K VEERD+EI+ LKNHIESRDAAES
Subjt:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES

A0A5A7SKR0 Ty3-gypsy retrotransposon protein

3.9e-15

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Query:  MLLKAVEERDYEISLKNHIESRDAA---ESKGRSFATGSLIQFGSLEPVVIYSSSKVLQNNDIQTVYSKEEEKHVEDADEGWALVMRRKKHKQNFSKKES
        ++LK   ++  E+ L +  ++  AA   +S  R  A GSLIQFGSLEPVVIYSS + LQNND +T   KEEEK V++ +EGW LV  RKK KQ+FS+KES
Subjt:  MLLKAVEERDYEISLKNHIESRDAA---ESKGRSFATGSLIQFGSLEPVVIYSSSKVLQNNDIQTVYSKEEEKHVEDADEGWALVMRRKKHKQNFSKKES

A0A5A7SKR0 Ty3-gypsy retrotransposon protein

2.0e-51

84.09

Show/hide

Query:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        M S+GNTSKA+SDIGKRPNTRSRSRE QSSEDMP FEVA+NIWE++S PPK GI+IKENP IDEH S SERS+EE+P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES
        KKVNML+KAVEERD+EI+ LKNHIESRDAAES
Subjt:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES

A0A5A7TZU9 Ribonuclease H

1.2e-51

83.33

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Query:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        M S+GNTSKA+SDIGKRPNTRSRSRE QSSEDMPPF+VA+NIWE++S PPK GI+IKENP +DEH S SERS+EE+P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES
        KKVNML+KAVEERD+EI+ LKNHIESRDAAES
Subjt:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES

A0A5A7TZU9 Ribonuclease H

5.1e-15

Show/hide

Query:  MLLKAVEERDYEISLKNHIESRDAA---ESKGRSFATGSLIQFGSLEPVVIYSSSKVLQNNDIQTVYSKEEEKHVEDADEGWALVMRRKKHKQNFSKKES
        ++LK   ++  E+ L +  ++  AA   +S  R  A GSLIQFGSLEPVVIYSS + LQNND +    KEEEK V++ +EGW LV RRKK KQ+FS+KES
Subjt:  MLLKAVEERDYEISLKNHIESRDAA---ESKGRSFATGSLIQFGSLEPVVIYSSSKVLQNNDIQTVYSKEEEKHVEDADEGWALVMRRKKHKQNFSKKES

A0A5A7TZU9 Ribonuclease H

1.5e-51

83.33

Show/hide

Query:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        M S+GNTSKA+SDIGKRPNTRSRSRE QSSEDMPPFEV +NIWE++S PPK GI+IKENP IDEH S SERS+EE+P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES
        KKVNML+KAVEE+D+EI+ LKNHIESRDAAES
Subjt:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES

A0A5D3BY32 Retrotransposon protein putative ty3-gypsy sub-class

4.4e-51

83.33

Show/hide

Query:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE
        M S+GNTSKA+ DIGKRPNTRSRSRE QSSEDMPPFEVA+NIWE++S PPK+GIIIKENP IDEH S S+RS+EE P PNIMSVMVTDVDTSEDRMAELE
Subjt:  MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELE

Query:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES
        KKVNML+KAVEERD+EI+ LKNHI+SRDAAES
Subjt:  KKVNMLLKAVEERDYEIS-LKNHIESRDAAES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATGTCCAGAGGCAACACTTCCAAAGCTATAAGCGACATCGGTAAAAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGATATGCCACCCTTTGA
GGTCGCACAGAATATTTGGGAAGAGTTGTCAAATCCACCAAAAAATGGAATTATAATAAAGGAAAATCCTGTGATTGATGAGCACGGTTCGTCCTCTGAACGCTCAAGTG
AGGAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATGTAGATACAAGTGAAGATAGAATGGCAGAACTTGAAAAGAAGGTTAACATGCTCTTGAAGGCAGTT
GAAGAAAGGGATTATGAGATTTCCCTAAAAAATCATATCGAAAGTCGTGATGCTGCTGAATCAAAGGGTCGATCATTTGCTACAGGGAGTCTAATCCAATTTGGATCTTT
GGAGCCTGTTGTTATATATTCTTCATCGAAGGTCTTACAAAATAATGACATTCAAACTGTTTACTCAAAAGAAGAAGAAAAGCACGTGGAGGATGCTGATGAGGGATGGG
CGCTAGTAATGCGTCGAAAGAAGCATAAACAAAATTTTTCTAAAAAAGAATCCCGTTTGTAG

mRNA sequence

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Protein sequence

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MMSRGNTSKAISDIGKRPNTRSRSREAQSSEDMPPFEVAQNIWEELSNPPKNGIIIKENPVIDEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAV
EERDYEISLKNHIESRDAAESKGRSFATGSLIQFGSLEPVVIYSSSKVLQNNDIQTVYSKEEEKHVEDADEGWALVMRRKKHKQNFSKKESRL

PI0027631 (gene) of Melon (PI 482460) v1 genome