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PI0027636 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027636
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 13, putative
Genome locationchr12:2648858..2649667
RNA-Seq ExpressionPI0027636
SyntenyPI0027636
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652596.1 hypothetical protein Csa_014373 [Cucumis sativus]4.8e-5686.76Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE
        MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRP PSRFK+EAIRSRT++VSDRRWDFAQSLWDSYEIVTVSKKL          
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE

Query:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
            ESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

XP_008438871.1 PREDICTED: uncharacterized protein LOC103483829 [Cucumis melo]6.7e-6696.32Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE
        MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGD 
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE

Query:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FRE ESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

XP_011651756.1 uncharacterized protein LOC105434938 [Cucumis sativus]8.8e-6695.59Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE
        MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRP PSRFK+EAIRSRT++VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGD 
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE

Query:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FRE ESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

XP_022137185.1 uncharacterized protein LOC111008716 [Momordica charantia]1.0e-4577.14Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVL
        MKKKP   ++ DD RHLEILKAVAQAWHSHTG+SKPA+EFDAHRRN R TPSRFKLEAIR+R +S  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVL
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVL

Query:  DGDEFREVESGG-GRSQRKRRESCNSLRNLFNRASSRRFN
        DGD F E + GG GR QRK  ES NSLRNLFNR SSRRFN
Subjt:  DGDEFREVESGG-GRSQRKRRESCNSLRNLFNRASSRRFN

XP_038894267.1 uncharacterized protein LOC120082919 [Benincasa hispida]3.7e-5688.24Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE
        MKKKP+L Q  DD RHLEILKAVAQAWHSHTG+SKPASEFDAHRRNSRPTPSRFKLEAIR+R +SVSDRRWDF QSLWDSYEIVTVSKKLEAGLVLD D 
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE

Query:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FREV+ GGGRSQRK+RESCNSLRNLF+RASSRRFNY
Subjt:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

TrEMBL top hitse value%identityAlignment
A0A0A0LTM3 Uncharacterized protein4.2e-6695.59Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE
        MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRP PSRFK+EAIRSRT++VSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGD 
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE

Query:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FRE ESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

A0A1S3AX17 uncharacterized protein LOC1034838293.2e-6696.32Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE
        MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGD 
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE

Query:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FRE ESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

A0A5A7UNW1 Uncharacterized protein3.2e-6696.32Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE
        MKKKPDLHQLHD DRHLEILKAVAQAWH+HTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVS+RRWDFAQSLWDSYEIVTVSKKLEAGLVLDGD 
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDE

Query:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
        FRE ESGGGRSQRKRRESCNSLRNLFNRASSRRFNY
Subjt:  FREVESGGGRSQRKRRESCNSLRNLFNRASSRRFNY

A0A6J1C5Z6 uncharacterized protein LOC1110087164.9e-4677.14Show/hide
Query:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVL
        MKKKP   ++ DD RHLEILKAVAQAWHSHTG+SKPA+EFDAHRRN R TPSRFKLEAIR+R +S  DR    RWDF+QSLWDSYEIVTVSKKLEAGLVL
Subjt:  MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDR----RWDFAQSLWDSYEIVTVSKKLEAGLVL

Query:  DGDEFREVESGG-GRSQRKRRESCNSLRNLFNRASSRRFN
        DGD F E + GG GR QRK  ES NSLRNLFNR SSRRFN
Subjt:  DGDEFREVESGG-GRSQRKRRESCNSLRNLFNRASSRRFN

A0A6J1KNC1 uncharacterized protein LOC1114957274.9e-4680.95Show/hide
Query:  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDEFREVESGGG
        + D+D HLEILKAVAQAW SHTGTSKPASEFDAHRRN R  PSRFKLEAIRSR++    RRWDF QSLWDSYEIV VSKKLEAGLVLDGD FRE + GGG
Subjt:  LHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDEFREVESGGG

Query:  RSQRKRRESCNSLRNLFNRASSRRFN
        R+QRK+RESCNSLRNLFNR +SRRFN
Subjt:  RSQRKRRESCNSLRNLFNRASSRRFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G24700.1 unknown protein5.9e-2043.75Show/hide
Query:  MKKKPDLHQLHDDD-----RHLEILKAVAQAWHSHTGTSK-PASEFDAHRRNS--RPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEA
        M+KK +    ++++     + LE++KA AQAW SH+ TSK    EFDA R+++  +   SRFK EA+ S  +  S   W+F QSLWD YEI++VSKKLE 
Subjt:  MKKKPDLHQLHDDD-----RHLEILKAVAQAWHSHTGTSK-PASEFDAHRRNS--RPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEA

Query:  GLVLDGDEFREVESGGGRSQRKR--RESCNSLRNLFNRASSRRF
         L L+   F   ++ G +  +K+  R+S NSLR+LF R+SS+RF
Subjt:  GLVLDGDEFREVESGGGRSQRKR--RESCNSLRNLFNRASSRRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGAAACCAGACCTTCATCAACTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGC
TAGTGAATTCGACGCCCATCGCCGGAATTCCAGACCCACGCCGTCTAGGTTCAAGCTTGAGGCTATTCGGAGTCGGACTAATTCCGTCAGCGATCGGAGATGGGACTTCG
CACAGTCGCTGTGGGATTCGTATGAGATCGTGACGGTTTCGAAGAAGCTAGAGGCAGGGCTGGTGCTCGACGGCGATGAGTTCCGGGAAGTTGAGAGCGGCGGTGGGCGG
AGTCAGCGAAAAAGGCGAGAGAGTTGTAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCGAGGAGATTCAATTATTAG
mRNA sequenceShow/hide mRNA sequence
TGAAGAAGAAGAAAGTAGAACAAAAATCCAAATGTAAGGTCCACAGTGTTCAACTGTAAAAGTACCAAAAATCAAAACCCATCTCTCTCGGAAGAACCCCCAAATTTGAG
GTTGTGATTGAACCTCATCATAAACAATGGCCCCGCCCCCAGTTTCAATTCCTTAATCCACACACACACACACGCACACACATTATGAAGAAGAAACCAGACCTTCATCA
ACTCCATGACGACGATCGTCATCTCGAAATCCTCAAGGCCGTCGCTCAGGCATGGCACAGCCACACCGGCACTTCAAAGCCTGCTAGTGAATTCGACGCCCATCGCCGGA
ATTCCAGACCCACGCCGTCTAGGTTCAAGCTTGAGGCTATTCGGAGTCGGACTAATTCCGTCAGCGATCGGAGATGGGACTTCGCACAGTCGCTGTGGGATTCGTATGAG
ATCGTGACGGTTTCGAAGAAGCTAGAGGCAGGGCTGGTGCTCGACGGCGATGAGTTCCGGGAAGTTGAGAGCGGCGGTGGGCGGAGTCAGCGAAAAAGGCGAGAGAGTTG
TAATAGTTTGAGGAATTTGTTTAATAGGGCTTCTTCGAGGAGATTCAATTATTAGGGATTTCAAGTTCGAATTCGAACTGATGAATGGAATGGGAAACTTTGTTGATTAT
CAATTTTTGAAATCCAGAGGTCTTGATTTTTCGTGTTTTGTTTTTTATTTTTTGAGTAATTAAACTTGTAAACTTCTTTTCCAATTCTTTGTATTTTAAAATAAATTAAT
TATGAAAAATTACTCTTAATTTCTTAAATATATAGTCAAT
Protein sequenceShow/hide protein sequence
MKKKPDLHQLHDDDRHLEILKAVAQAWHSHTGTSKPASEFDAHRRNSRPTPSRFKLEAIRSRTNSVSDRRWDFAQSLWDSYEIVTVSKKLEAGLVLDGDEFREVESGGGR
SQRKRRESCNSLRNLFNRASSRRFNY