; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027652 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027652
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:10610696..10611232
RNA-Seq ExpressionPI0027652
SyntenyPI0027652
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-6576.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM
        MD H ++AS++N FI SQRQLLL LELL ND KRIT +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLL+T+AGL STE++DVEEMVAM
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM

Query:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE
        FLH+LAHDVKN VIQREF+RSGET+S HFN+VLLAV+RLH ELL KPQP+ + C+D RWRWFE
Subjt:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-6576.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM
        MD H ++AS++N FI SQRQLLL LELL ND KRIT +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLL+T+AGL STE++DVEEMVAM
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM

Query:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE
        FLH+LAHDVKN VIQREF+RSGET+S HFN+VLLAV+RLH ELL KPQP+ + C+D RWRWFE
Subjt:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-6576.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM
        MD H ++AS++N FI SQRQLLL LELL ND KRIT +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLL+T+AGL STE++DVEEMVAM
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM

Query:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE
        FLH+LAHDVKN VIQREF+RSGET+S HFN+VLLAV+RLH ELL KPQP+ + C+D RWRWFE
Subjt:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]9.7e-6576.07Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM
        MD H ++AS++N FI SQRQLLL LELL ND KRIT +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLL+T+AGL STE++DVEEMVAM
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM

Query:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE
        FLH+LAHDVKN VIQREF+RSGET+S HFN+VLLAV+RLH ELL KPQP+ + C+D RW+WFE
Subjt:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]9.7e-6575.46Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM
        MD H ++AS++N FI SQRQLLL LELL ND KRIT +P + RHRIRQLAYFRMIHESDLVCRQSTRMDRRCF ILCHLL+T+AGL STE++DVEEMVAM
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM

Query:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE
        FLH+LAHDVKN VIQREF+RSGET+  HFN++ LAV+RLH ELL KPQP+ + C+D RWRWFE
Subjt:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein1.6e-6576.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM
        MD H ++AS++N FI SQRQLLL LELL ND KRIT +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLL+T+AGL STE++DVEEMVAM
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM

Query:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE
        FLH+LAHDVKN VIQREF+RSGET+S HFN+VLLAV+RLH ELL KPQP+ + C+D RWRWFE
Subjt:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE

A0A5A7TXW1 Retrotransposon protein1.6e-6576.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM
        MD H ++AS++N FI SQRQLLL LELL ND KRIT +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLL+T+AGL STE++DVEEMVAM
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM

Query:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE
        FLH+LAHDVKN VIQREF+RSGET+S HFN+VLLAV+RLH ELL KPQP+ + C+D RWRWFE
Subjt:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE

A0A5A7U476 Retrotransposon protein4.7e-6576.07Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM
        MD H ++AS++N FI SQRQLLL LELL ND KRIT +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLL+T+AGL STE++DVEEMVAM
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM

Query:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE
        FLH+LAHDVKN VIQREF+RSGET+S HFN+VLLAV+RLH ELL KPQP+ + C+D RW+WFE
Subjt:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE

A0A5A7VHB0 Retrotransposon protein4.7e-6575.46Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM
        MD H ++AS++N FI SQRQLLL LELL ND KRIT +P + RHRIRQLAYFRMIHESDLVCRQSTRMDRRCF ILCHLL+T+AGL STE++DVEEMVAM
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM

Query:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE
        FLH+LAHDVKN VIQREF+RSGET+  HFN++ LAV+RLH ELL KPQP+ + C+D RWRWFE
Subjt:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE

A0A5D3BDX0 Retrotransposon protein2.1e-6576.69Show/hide
Query:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM
        MD H ++AS++N FI SQRQLLL LELL ND KRIT +P + RHRIRQLAYFRMIH SDLVCRQSTRMDRRCF ILCHLL+T+AGL STE++DVEEMVAM
Subjt:  MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAM

Query:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE
        FLH+LAHDVKN VIQREF+RSGET+S HFN+VLLAV+RLH ELL KPQP+ + C+D RWRWFE
Subjt:  FLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein3.6e-0937.5Show/hide
Query:  FRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKP
        +R + +    C Q  RM   CFT LC++LQT   LQ T  I +EE VAMFL +  H+     +   F R+ ETV   F  VL A   L  + +  P
Subjt:  FRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKP

AT5G28730.1 unknown protein6.4e-0634.44Show/hide
Query:  IHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELL
        I+ +++ C+   RM    FT LC +L    GLQS+  I ++E VA+FL + A +     I   F  + ET+   F+ VL A+ RL  E +
Subjt:  IHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRLHGELL

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)6.6e-1137.5Show/hide
Query:  FRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRL
        +++++  +  C ++ RMD+  F  LC LLQT   L+ T  I +E  +A+FL ++ H+++   +Q  F  SGET+S HFN VL AV+ +
Subjt:  FRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAMFLHVLAHDVKNCVIQREFVRSGETVSHHFNLVLLAVLRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACACACGACGATATTGCGTCCCTACTTAACGTGTTCATAACATCCCAACGTCAGTTGTTATTGACGTTGGAATTGTTATTGAATGACAACAAGAGGATAACGCA
AGTACCTTCGGACATGAGGCATAGGATTAGACAGTTGGCTTACTTTCGCATGATCCATGAAAGCGACCTCGTGTGTCGTCAAAGTACGCGAATGGATAGACGATGCTTCA
CCATCTTATGCCACCTACTTCAGACTGTAGCGGGATTACAGTCGACCGAAATTATTGATGTCGAAGAAATGGTCGCCATGTTTCTTCACGTACTGGCACACGACGTGAAA
AATTGTGTGATTCAACGTGAGTTTGTGCGGTCCGGTGAGACTGTTTCACATCATTTCAATCTTGTACTGTTGGCCGTTTTACGACTCCATGGCGAGCTTTTGGCAAAACC
ACAACCGATGACAAGCACTTGCTCTGATGCACGGTGGAGGTGGTTCGAGGTACGATTTGTCATGGTCACAGTTCGACCAACAATATCGCGTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACACACACGACGATATTGCGTCCCTACTTAACGTGTTCATAACATCCCAACGTCAGTTGTTATTGACGTTGGAATTGTTATTGAATGACAACAAGAGGATAACGCA
AGTACCTTCGGACATGAGGCATAGGATTAGACAGTTGGCTTACTTTCGCATGATCCATGAAAGCGACCTCGTGTGTCGTCAAAGTACGCGAATGGATAGACGATGCTTCA
CCATCTTATGCCACCTACTTCAGACTGTAGCGGGATTACAGTCGACCGAAATTATTGATGTCGAAGAAATGGTCGCCATGTTTCTTCACGTACTGGCACACGACGTGAAA
AATTGTGTGATTCAACGTGAGTTTGTGCGGTCCGGTGAGACTGTTTCACATCATTTCAATCTTGTACTGTTGGCCGTTTTACGACTCCATGGCGAGCTTTTGGCAAAACC
ACAACCGATGACAAGCACTTGCTCTGATGCACGGTGGAGGTGGTTCGAGGTACGATTTGTCATGGTCACAGTTCGACCAACAATATCGCGTATTTGA
Protein sequenceShow/hide protein sequence
MDTHDDIASLLNVFITSQRQLLLTLELLLNDNKRITQVPSDMRHRIRQLAYFRMIHESDLVCRQSTRMDRRCFTILCHLLQTVAGLQSTEIIDVEEMVAMFLHVLAHDVK
NCVIQREFVRSGETVSHHFNLVLLAVLRLHGELLAKPQPMTSTCSDARWRWFEVRFVMVTVRPTISRI