; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027661 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027661
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr09:14546218..14548712
RNA-Seq ExpressionPI0027661
SyntenyPI0027661
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]5.7e-3579.17Show/hide
Query:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
        LLK ++LTG+NYATWKS LNMILVI DL FVLMEECP  P ++ASQ++RDAYDRWTKAN+KAR++ILASMSD+LSKKHE MVTARQIMDSL+EMFG
Subjt:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]5.7e-3579.17Show/hide
Query:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
        LLK ++LTG+NYATWKS LNMILVI DL FVLMEECP  P ++ASQ++RDAYDRWTKAN+KAR++ILASMSD+LSKKHE MVTARQIMDSL+EMFG
Subjt:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
TYK02840.1 gag/pol protein [Cucumis melo var. makuwa]5.7e-3579.17Show/hide
Query:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
        LLK ++LTG+NYATWKS LNMILVI DL FVLMEECP  P ++ASQ++RDAYDRWTKAN+KAR++ILASMSD+LSKKHE MVTARQIMDSL+EMFG
Subjt:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
TYK04171.1 gag/pol protein [Cucumis melo var. makuwa]5.7e-3579.17Show/hide
Query:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
        LLK ++LTG+NYATWKS LNMILVI DL FVLMEECP  P ++ASQ++RDAYDRWTKAN+KAR++ILASMSD+LSKKHE MVTARQIMDSL+EMFG
Subjt:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
TYK16041.1 gag/pol protein [Cucumis melo var. makuwa]5.7e-3579.17Show/hide
Query:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
        LLK ++LTG+NYATWKS LNMILVI DL FVLMEECP  P ++ASQ++RDAYDRWTKAN+KAR++ILASMSD+LSKKHE MVTARQIMDSL+EMFG
Subjt:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
TrEMBL top hitse value%identityAlignment
A0A5A7TZD0 Gag/pol protein2.7e-3579.17Show/hide
Query:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
        LLK ++LTG+NYATWKS LNMILVI DL FVLMEECP  P ++ASQ++RDAYDRWTKAN+KAR++ILASMSD+LSKKHE MVTARQIMDSL+EMFG
Subjt:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
A0A5A7UYE8 Gag/pol protein2.7e-3579.17Show/hide
Query:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
        LLK ++LTG+NYATWKS LNMILVI DL FVLMEECP  P ++ASQ++RDAYDRWTKAN+KAR++ILASMSD+LSKKHE MVTARQIMDSL+EMFG
Subjt:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
A0A5D3BUN8 Gag/pol protein2.7e-3579.17Show/hide
Query:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
        LLK ++LTG+NYATWKS LNMILVI DL FVLMEECP  P ++ASQ++RDAYDRWTKAN+KAR++ILASMSD+LSKKHE MVTARQIMDSL+EMFG
Subjt:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
A0A5D3BWT8 Gag/pol protein2.7e-3579.17Show/hide
Query:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
        LLK ++LTG+NYATWKS LNMILVI DL FVLMEECP  P ++ASQ++RDAYDRWTKAN+KAR++ILASMSD+LSKKHE MVTARQIMDSL+EMFG
Subjt:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
A0A5D3CVV9 Gag/pol protein2.7e-3579.17Show/hide
Query:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
        LLK ++LTG+NYATWKS LNMILVI DL FVLMEECP  P ++ASQ++RDAYDRWTKAN+KAR++ILASMSD+LSKKHE MVTARQIMDSL+EMFG
Subjt:  LLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAGCCAGTCGGTGAGGATTTTCGTTCGTCAGCCCAGCCGTCCACTTTGCAGCCCGGTCGTCCGTCGCGCAGAGCCTACCACTTCGCAGCCTCGTCCGTCGCGCAG
AGCCTACCAGCTCGAAGCCAAGCCATCCGTCGCACAGAGTCCCTTCGCAGCCCACGTCGCACAGACTTCCTTCGCAGCTCATGTCGCGCAGACTTCCTTCGCAGCTCACG
TCCTGCAGAGTCCCTTCGCAGCCCACGTCGCACTCGCAGACGTCCGTCAGCCTAGCCCCACGTCGAGCAGAGCAGCCGTCCGTCAGCCTAGCCCCACGTCCATCCGGTTA
CGTAAATTTCACCCTAAAAAAACACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATTGATGATCTACG
CTTCGTCTTAATGGAGGAATGTCCTTCTTCCCCTGTTCGAAATGCATCCCAGACCATCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACA
TCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAATCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAGCCAGTCGGTGAGGATTTTCGTTCGTCAGCCCAGCCGTCCACTTTGCAGCCCGGTCGTCCGTCGCGCAGAGCCTACCACTTCGCAGCCTCGTCCGTCGCGCAG
AGCCTACCAGCTCGAAGCCAAGCCATCCGTCGCACAGAGTCCCTTCGCAGCCCACGTCGCACAGACTTCCTTCGCAGCTCATGTCGCGCAGACTTCCTTCGCAGCTCACG
TCCTGCAGAGTCCCTTCGCAGCCCACGTCGCACTCGCAGACGTCCGTCAGCCTAGCCCCACGTCGAGCAGAGCAGCCGTCCGTCAGCCTAGCCCCACGTCCATCCGGTTA
CGTAAATTTCACCCTAAAAAAACACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATTGATGATCTACG
CTTCGTCTTAATGGAGGAATGTCCTTCTTCCCCTGTTCGAAATGCATCCCAGACCATCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACA
TCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAATCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGATAA
Protein sequenceShow/hide protein sequence
MPSQSVRIFVRQPSRPLCSPVVRRAEPTTSQPRPSRRAYQLEAKPSVAQSPFAAHVAQTSFAAHVAQTSFAAHVLQSPFAAHVALADVRQPSPTSSRAAVRQPSPTSIRL
RKFHPKKTLLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPSSPVRNASQTIRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFG