CuGenDBv2

Gene ID	PI0027672
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	28S ribosomal protein S33, mitochondrial
Genome location	chr12:3472693..3477262
RNA-Seq Expression	PI0027672
Synteny	PI0027672
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component)
InterPro domains	IPR013219 - Ribosomal protein S27/S33, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652638.1 hypothetical protein Csa_013164 [Cucumis sativus]

1.2e-43

96.08

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR EQERLSKLEM KRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]

1.2e-43

96.08

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR EQERLSKLEM KRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_008440305.1 PREDICTED: 28S ribosomal protein S33, mitochondrial [Cucumis melo]

2.4e-44

98.04

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAR EQERLSKLEM KRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_023000758.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima]

1.6e-43

93.14

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAAV+KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR+EQERLSKLEM KRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]

1.2e-43

96.08

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR EQERLSKLEM KRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA7 Uncharacterized protein

5.8e-44

96.08

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAV+KGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR EQERLSKLEM KRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A1S3B0S3 28S ribosomal protein S33, mitochondrial

1.2e-44

98.04

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAR EQERLSKLEM KRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A5A7UM66 28S ribosomal protein S33

1.2e-44

98.04

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAR EQERLSKLEM KRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial

1.7e-43

92.16

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAA++KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR+EQERLSKLEM KRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial

7.6e-44

93.14

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MATNSLK MIAAAV+KGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MAR+EQERLSKLEM KRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

SwissProt top hits

e value

%identity

Alignment

P53305 Mitochondrial 37S ribosomal protein S27

5.1e-05

42.22

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Query:  VTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAA
        V E  A+IF    NP+G R+  K+L ++L G  VA +Y   DI K         D   +  EEQ RLS +E +KRRGKG PKK +   AA
Subjt:  VTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPY-DIKK--------DDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAA

Arabidopsis top hits

e value

%identity

Alignment

AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

5.1e-40

79.41

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Query:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR
        MA+ SLKS+I++AV +GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKVA+WYPYDIK +DP V+AREE+ER+SKLEM KRR KGPPKKG G+RAAKR
Subjt:  MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTACAAATAGCCTGAAGAGTATGATTGCTGCAGCAGTCAGTAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATC
TACCCACAAGCTTCTGCGCAAAAAACTCATTGGTGACAAAGTAGCACAGTGGTATCCATATGACATCAAAAAGGATGATCCTCTTGTCATGGCTCGCGAAGAACAAGAGC
GCTTGTCTAAGCTTGAAATGCGAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAACAAGTAG

mRNA sequence

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CTGGACGCGGCGGCGATTACCTCCCCCACCGATCGTGCTTGTTAGTTTTAAACTTTCAGTTTCTCTCTGTCACTGGGAAAGCCAGAAGACAGAATGGCTACAAATAGCCT
GAAGAGTATGATTGCTGCAGCAGTCAGTAAGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATACTTAACCCAACAGGTCAACGATCTACCCACAAGCTTCTGC
GCAAAAAACTCATTGGTGACAAAGTAGCACAGTGGTATCCATATGACATCAAAAAGGATGATCCTCTTGTCATGGCTCGCGAAGAACAAGAGCGCTTGTCTAAGCTTGAA
ATGCGAAAGCGTCGTGGTAAGGGACCACCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAACAAGTAGAATCAATGACAGTGGTATTGTTCCTGCAGTTATTTTTG
TTGTTTTTTCTTAACAAAGTTTAGGTTATGGGCCAGTTTCCTCACGGTTGTAATGACTTCTATTCATCATTATGATCAATCTTTTCTACAAATGTATTTGGTTCAAGCAA
ATTAATACATACTATACATGGAAAAGACTAGAACTGATACTTCTATGTAGGAAAGAACCAATAGGCAGTGTCTAGAATTCATTACCAGGTTCAAGATCAAACGAACTGGA
TATTGATACATATTTTTCTTCAGTGGAGCTTTGTTTCATGAAAAAGAAAACTATATGAATACAAATATCAGGTTCAAGTATGATAAGTTGATTGCGTTGGAACTGAAATC
CAATTTATTTTCCACCATGTTCTAAATCTAAGGACCTGCACTGGGCGTGGTTTCCTCCTTAACCTGCTTTTGGGTAATTAACTTGTCTTGTTGATGAGCCATATCATACG
TTGCATGAAGACCAAAGAAAACATAATAGATAAGCATCACCAACGTGCAGATTCCAAATCTTTCAAAAGCCTCAGGACCTAAAGATCCCATGAGAAAGATGTTTGTCGCA
ATTGACAAACTTGGCAGCCATGGTACCAATGGCACACCCCAAACTTTTGGCTTTCTTTGCATTGGCAGAAGCAATGCAATCCCCAAAGTCCCCAGAAACCAAACTGGGAC
GGTCACAACGTATCCTATCCAACCTTTTGGATAAAGTCCCCAGTATGCAGAAGTAGCCATGGAGGAACCAATGATGATTATCAAGAGAATGAAAAGTTTCAACTGATCTA
ACCATGGAGTGACGCCTCTTGCATAGTATCTCCTTACCAGAAGTGCCACAGCCATCATCATGAAGACGAAGAGCGTGCTGACCGACAACAAGCTCGCTAGAACATCCAAG
CTAGAGAAGAAAGCAATGCAGCCACTTGTTATGGTAATCAGGAGTGTAGCATTGATGGGAGTTCCAGTCTTTGGATGGACAAGAGCAAACCAAGGAGGAATCATGTGAGC
TCGAGCAATGTGAGTTGTATACCGAGCTTGCCCGAGCGCCCCAACCAAAAGAACAGTAGTCATCCCCTTCAAAGCACCAAGAGCCACCAAATACTTGGCCCATTTCATTC
CAACCCTCTCAAAAGCAACAGAGTAAGCTGCATCTGGGCTTATATCAGTATATTTCTGCATCATACTAAGCGACAGTGCCATCAAACAATATATCACAGTGATAATCGAC
ATCGATCCCAACAATCCCAAAGGTATGTCTTTTGATGGATTTTTAGTTTCTTCAGCCATTGTAGCAATGTTATCAAAACCTCCATAAGCAAAGTAAACAATTGCAGCAGC
TTGGAAAATGCCTTTAACTCCAAAAGGCGTAAAAGGAGTCAAATTTGATTTATCAGCATGAACAAAACCTGCAATTATAACAAACAGAATCACAACTGTATTAATAGCTG
AAGCAATCCAATTCAGATATGAAGTTTTCCTCGTGCTTGTCATCGCTATCGTTGCAGCAATCGCCAATACCCCAACGGCTATAGGGTCGAGAAGATTGTATCCATCTTTG
AGATTCGTGTGGATAAGCAAAGATTTTTCGGGTCGGTCCAAAAGTGAGGTGAAGTAAGAAGTCCATGATCGAGCAACAGCAGCGGTACCAACAATACTCTCGAGGAGAAT
GTTGCCAGCAGTAATGAAAGCTGCAAAGTCCCCTAATTCAATTCTTAAGTATGCAAATGATCCCCCAGCAACTGGGATTTCAATAGCAAACTCTGTATAGCAAAAAACAG
AGAGCATTGCAGAAATGCCGGAAGCTACGTAAGAAAGAACAATGGCTGGTCCAGCATGTTCACTAGCTTCTTGGCCTGTGAGAACAAAAATTCCTGCACCAATTACAGCA
CCAAATCCAAACCAAGTAAGATCCCACCAAGTAAGGCAACGTTTCATTTCGTTCTCGCTTCGTTTTCTTAGCTCTCCGATTTCATTTTCGTCGAATGATCTGCTTTGAAG
ACGGTCGATGAATCGAAACCATGTCTGTGACAGAGCAGTTCTGTAATTGCTCCAACTTTGAAAGGATTCTTCTGGTAAGAAATCTTGTTTGCTCCATCTCCACCAATAGC
TTCTTTGCTGATGAACAATAACTTCTTCCCCCATTTTGCTTTCTACAATTGAATTTTCTGTCATTCATGATTGATTTTAACAAATTATAAAGATGGCTTTTGAAGATACC
GACGGTGGGTTTAGGATTGGCCCACAAAGGTGTGAAATTGATGGTGTTTGTCTGTATCTTCAAGCCATAATATTAATGGCCGTCTTGCAGAGAAGTTTGGATGTTGATTA
GAGGATGTCATTTTCTGTTAATTTAATACATGAGCATTTGAAGTCTTTCATTGGCGTTAGGATCAAAGACTTCAAAGTCAACTAATTTGGATGTTACTGTGACTGTGAGT
GTGACCGAG

Protein sequence

Show/hide protein sequence

MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAREEQERLSKLEMRKRRGKGPPKKGQGRRAAKRNK

PI0027672 (gene) of Melon (PI 482460) v1 genome