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PI0027711 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027711
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:23326286..23327347
RNA-Seq ExpressionPI0027711
SyntenyPI0027711
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040386.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.1e-1660.67Show/hide
Query:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD
        M+ LT+AISK++GKGKLPAQPD ANVSVISLRSGK+L+TP + E+KV S P+ LN+ D+ KEEKVETN  PS+S        D+ P++D
Subjt:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD

KAA0041664.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-1660.67Show/hide
Query:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD
        M+  T+AISK++GKGKLPAQPD ANVSVISLRSGKI++TP + E+KVTS P+ LN+ +E KEEKVE N LPS+S        D+ P++D
Subjt:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD

KAA0060357.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.1e-1660.67Show/hide
Query:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD
        M+ LT+AISK++GKGKLPAQPD ANVSVISLRSGKIL+TP + E+KVTS P+ LN+ +E +EE VETN LP +S      ++D+ P++D
Subjt:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD

KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-1661.8Show/hide
Query:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD
        M+ LT+AISK++GKGKLPAQPD ANVS ISLRSGKIL+TP + E+KVTS P+ LN+ +E KEEKVETN  PS+S        D+ P++D
Subjt:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD

TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-1661.8Show/hide
Query:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD
        M+ LT+AISK++GKGKLPAQPD ANVS ISLRSGKIL+TP + E+KVTS P+ LN+ +E KEEKVETN  PS+S        D+ P++D
Subjt:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD

TrEMBL top hitse value%identityAlignment
A0A5A7TE06 Retrotransposon gag protein1.2e-1660.67Show/hide
Query:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD
        M+  T+AISK++GKGKLPAQPD ANVSVISLRSGKI++TP + E+KVTS P+ LN+ +E KEEKVE N LPS+S        D+ P++D
Subjt:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD

A0A5A7V0M2 Retrotransposon gag protein2.0e-1660.67Show/hide
Query:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD
        M+ LT+AISK++GKGKLPAQPD ANVSVISLRSGKIL+TP + E+KVTS P+ LN+ +E +EE VETN LP +S      ++D+ P++D
Subjt:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD

A0A5A7V594 Retrotransposon gag protein1.2e-1661.8Show/hide
Query:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD
        M+ LT+AISK++GKGKLPAQPD ANVS ISLRSGKIL+TP + E+KVTS P+ LN+ +E KEEKVETN  PS+S        D+ P++D
Subjt:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD

A0A5D3BWD4 Retrotransposon gag protein2.0e-1660.67Show/hide
Query:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD
        M+ LT+AISK++GKGKLPAQPD ANVSVISLRSGK+L+TP + E+KV S P+ LN+ D+ KEEKVETN  PS+S        D+ P++D
Subjt:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD

A0A5D3DS57 Retrotransposon gag protein1.2e-1661.8Show/hide
Query:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD
        M+ LT+AISK++GKGKLPAQPD ANVS ISLRSGKIL+TP + E+KVTS P+ LN+ +E KEEKVETN  PS+S        D+ P++D
Subjt:  MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPS-EEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAATCTAACAAGCGCAATTAGCAAATTAGAAGGGAAAGGTAAACTTCCGGCCCAACCGGATCTTGCTAACGTAAGTGTCATCTCACTTAGAAGCGGTAAAATTCT
GGAAACCCCTCCAAGTGAAGAAAAGGTAACTTCTAACCCTATCCTTCTTAATAATAATGATGAGATCAAGGAAGAAAAAGTAGAAACAAATGCTTTACCATCTAGTTCTA
ACAAAGAATTGCATGATGAAATTGACGAAATGCCTATTGATGATGAATTCTCTGCACAAGAAATTGTTGAAAACAAAGAGATGATAGAAGTAGAATTAGAAAGTAATCTT
GAGAAATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTAATCTAACAAGCGCAATTAGCAAATTAGAAGGGAAAGGTAAACTTCCGGCCCAACCGGATCTTGCTAACGTAAGTGTCATCTCACTTAGAAGCGGTAAAATTCT
GGAAACCCCTCCAAGTGAAGAAAAGGTAACTTCTAACCCTATCCTTCTTAATAATAATGATGAGATCAAGGAAGAAAAAGTAGAAACAAATGCTTTACCATCTAGTTCTA
ACAAAGAATTGCATGATGAAATTGACGAAATGCCTATTGATGATGAATTCTCTGCACAAGAAATTGTTGAAAACAAAGAGATGATAGAAGTAGAATTAGAAAGTAATCTT
GAGAAATTGTGA
Protein sequenceShow/hide protein sequence
MSNLTSAISKLEGKGKLPAQPDLANVSVISLRSGKILETPPSEEKVTSNPILLNNNDEIKEEKVETNALPSSSNKELHDEIDEMPIDDEFSAQEIVENKEMIEVELESNL
EKL