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PI0027736 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027736
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr06:25886575..25887575
RNA-Seq ExpressionPI0027736
SyntenyPI0027736
Gene Ontology termsGO:0000723 - telomere maintenance (biological process)
GO:0006303 - double-strand break repair via nonhomologous end joining (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0043564 - Ku70:Ku80 complex (cellular component)
GO:0003678 - DNA helicase activity (molecular function)
GO:0003684 - damaged DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016301 - kinase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0042162 - telomeric DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048797.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-2756.12Show/hide
Query:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLIPPTSIVRKAMTNQFPPMSI
        VW T ND + +A+LEEA+R YDFL  L+PKFD V G ILGQRPL SLMEV YEV L  DRTN MS+LTTPA DSTAF          +K  +N+      
Subjt:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLIPPTSIVRKAMTNQFPPMSI

Query:  SSRCAYMSESVGTSQPSGPTVKQNGPSSSSTLGALTQSV
        +SRCAY+SE  GTSQ +GPT  QN P    TL  + QSV
Subjt:  SSRCAYMSESVGTSQPSGPTVKQNGPSSSSTLGALTQSV

KAA0068096.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.0e-2450.67Show/hide
Query:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA
        VWDTPNDS Q+A+L+EA+RVYDFLA L+ KFD VYGRILGQRPL SLMEV +EVCL +DRTN M VLTTP  DS AF                  + +K 
Subjt:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA

Query:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS
         +N+   +      AY+SE+    TSQ   PT +Q   + + TLGA+ QS
Subjt:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS

TYK06573.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa]8.8e-2473.08Show/hide
Query:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFL
        VWDTPND +Q+A+LEE NR+YDF+A L+PKFD V G ILGQRPL SLMEV +EV L  DRTNVM VLTTP TDSTAF+
Subjt:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFL

TYK26078.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.0e-2450.67Show/hide
Query:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA
        VWDTPNDS Q+A+L+EA+RVYDFLA L+ KFD VYGRILGQRPL SLMEV +EVCL +DRTN M VLTTP  DS AF                  + +K 
Subjt:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA

Query:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS
         +N+   +      AY+SE+    TSQ   PT +Q   + + TLGA+ QS
Subjt:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS

TYK31446.1 TRAF-like family protein [Cucumis melo var. makuwa]1.5e-2350.67Show/hide
Query:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA
        VWDTPND  Q+A+LEEA+RVYDFLA L+PKFD V GRILGQRPL SLMEV +EV L  DRTN M VLTTP  DS AF                    +K 
Subjt:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA

Query:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS
         +N+      +S  AY+SE+    TSQ + PT  Q   + + TLGA+ QS
Subjt:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS

TrEMBL top hitse value%identityAlignment
A0A5A7VND8 Retrovirus-related Pol polyprotein from transposon TNT 1-945.0e-2550.67Show/hide
Query:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA
        VWDTPNDS Q+A+L+EA+RVYDFLA L+ KFD VYGRILGQRPL SLMEV +EVCL +DRTN M VLTTP  DS AF                  + +K 
Subjt:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA

Query:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS
         +N+   +      AY+SE+    TSQ   PT +Q   + + TLGA+ QS
Subjt:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS

A0A5D3C3S6 UBN2_3 domain-containing protein4.3e-2473.08Show/hide
Query:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFL
        VWDTPND +Q+A+LEE NR+YDF+A L+PKFD V G ILGQRPL SLMEV +EV L  DRTNVM VLTTP TDSTAF+
Subjt:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFL

A0A5D3DBU1 Reverse transcriptase6.3e-2856.12Show/hide
Query:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLIPPTSIVRKAMTNQFPPMSI
        VW T ND + +A+LEEA+R YDFL  L+PKFD V G ILGQRPL SLMEV YEV L  DRTN MS+LTTPA DSTAF          +K  +N+      
Subjt:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLIPPTSIVRKAMTNQFPPMSI

Query:  SSRCAYMSESVGTSQPSGPTVKQNGPSSSSTLGALTQSV
        +SRCAY+SE  GTSQ +GPT  QN P    TL  + QSV
Subjt:  SSRCAYMSESVGTSQPSGPTVKQNGPSSSSTLGALTQSV

A0A5D3DR95 Retrovirus-related Pol polyprotein from transposon TNT 1-945.0e-2550.67Show/hide
Query:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA
        VWDTPNDS Q+A+L+EA+RVYDFLA L+ KFD VYGRILGQRPL SLMEV +EVCL +DRTN M VLTTP  DS AF                  + +K 
Subjt:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA

Query:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS
         +N+   +      AY+SE+    TSQ   PT +Q   + + TLGA+ QS
Subjt:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS

A0A5D3E711 TRAF-like family protein7.3e-2450.67Show/hide
Query:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA
        VWDTPND  Q+A+LEEA+RVYDFLA L+PKFD V GRILGQRPL SLMEV +EV L  DRTN M VLTTP  DS AF                    +K 
Subjt:  VWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLI----------PPTSIVRKA

Query:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS
         +N+      +S  AY+SE+    TSQ + PT  Q   + + TLGA+ QS
Subjt:  MTNQFPPMSISSRCAYMSES--VGTSQPSGPTVKQNGPSSSSTLGALTQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCAAGCGTCAAAATTCTTCCTGTTTGGGATACTCCTAATGACAGTTTACAGTTTGCTAGGCTGGAAGAAGCTAATCGGGTTTATGATTTTCTTGCCAGTCTCCA
TCCTAAGTTTGATACTGTTTATGGTCGTATTCTTGGCCAGAGACCCCTTTCATCCCTGATGGAAGTCCGCTATGAAGTTTGTCTTGCAAACGATCGCACGAATGTCATGA
GTGTTTTAACTACCCCTGCCACCGACTCTACTGCCTTTTTAGTGCTCATTCCTCCAACCTCAATAGTGAGAAAAGCAATGACAAACCAGTTCCCACCTATGAGTATTAGT
TCAAGATGTGCTTACATGAGTGAGTCTGTGGGAACATCTCAACCGTCTGGTCCTACTGTTAAACAGAACGGTCCCAGTTCATCCTCCACTTTAGGAGCCCTTACTCAATC
AGTTGGCTGCATGAAGGTGGTCACTAGAGTTGTCATCGAAGTGCTTGTTAGAGTCCAAAATTGGTCATCAAAGTTGATCGCTAGAGTTGTCATCGAAGTGATTATCAAGC
CCAAAGTTGGTCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCAAGCGTCAAAATTCTTCCTGTTTGGGATACTCCTAATGACAGTTTACAGTTTGCTAGGCTGGAAGAAGCTAATCGGGTTTATGATTTTCTTGCCAGTCTCCA
TCCTAAGTTTGATACTGTTTATGGTCGTATTCTTGGCCAGAGACCCCTTTCATCCCTGATGGAAGTCCGCTATGAAGTTTGTCTTGCAAACGATCGCACGAATGTCATGA
GTGTTTTAACTACCCCTGCCACCGACTCTACTGCCTTTTTAGTGCTCATTCCTCCAACCTCAATAGTGAGAAAAGCAATGACAAACCAGTTCCCACCTATGAGTATTAGT
TCAAGATGTGCTTACATGAGTGAGTCTGTGGGAACATCTCAACCGTCTGGTCCTACTGTTAAACAGAACGGTCCCAGTTCATCCTCCACTTTAGGAGCCCTTACTCAATC
AGTTGGCTGCATGAAGGTGGTCACTAGAGTTGTCATCGAAGTGCTTGTTAGAGTCCAAAATTGGTCATCAAAGTTGATCGCTAGAGTTGTCATCGAAGTGATTATCAAGC
CCAAAGTTGGTCGTTAA
Protein sequenceShow/hide protein sequence
MSASVKILPVWDTPNDSLQFARLEEANRVYDFLASLHPKFDTVYGRILGQRPLSSLMEVRYEVCLANDRTNVMSVLTTPATDSTAFLVLIPPTSIVRKAMTNQFPPMSIS
SRCAYMSESVGTSQPSGPTVKQNGPSSSSTLGALTQSVGCMKVVTRVVIEVLVRVQNWSSKLIARVVIEVIIKPKVGR