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PI0027841 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027841
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr11:26158623..26159099
RNA-Seq ExpressionPI0027841
SyntenyPI0027841
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040193.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-5576.55Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN
        MFGQPSIQI+ EAIKYVYN  MKE QSVREHVLDM+V FN+AE N
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-6082.07Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN

TYK00843.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-5676.32Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGRSLTSK
        +F QPSIQI+ EAIKYVYNA MKEGQSVREH LDM+V FNVAE NG  +  K
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGRSLTSK

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]6.4e-6082.07Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]1.2e-5573.29Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        M+SSII LL +EKL GDNY+ WKSNLN ILV+DDLRFVL EECP +P  NA++TVR+AYDRW KANEKAR+YILASMSDVL+KKHES+ TA++I+DSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG
        +FGQPS  +RHEAIK++Y  RMKEG SVREHVLDMM+ FN+AE NG
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG

TrEMBL top hitse value%identityAlignment
A0A5A7U2U6 Gag/pol protein2.3e-5573.97Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        M++SI+ LL ++KL GDNYATWKSNLN ILVIDDLRFVL EE P +P  NA+Q VR+AYDRW KANEKARVYI ASMSDVL+KKHES+ TA++IMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG
        MFGQPS  +RHEAIKY+Y  +MKEG SVREHVLDMM+ FN+AE NG
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNG

A0A5A7VA67 Gag/pol protein3.1e-6082.07Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN

A0A5D3BM47 Gag/pol protein9.3e-5776.32Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGRSLTSK
        +F QPSIQI+ EAIKYVYNA MKEGQSVREH LDM+V FNVAE NG  +  K
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGRSLTSK

A0A5D3D0D9 Gag/pol protein3.1e-6082.07Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN

A0A5D3DQJ2 Gag/pol protein1.3e-5576.55Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN
        MFGQPSIQI+ EAIKYVYN  MKE QSVREHVLDM+V FN+AE N
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCTCCTGTTCGAAATGCATCCCAAACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCT
TGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGG
CACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGCG
GTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCTCCTGTTCGAAATGCATCCCAAACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCT
TGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGG
CACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGCG
GTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAG
Protein sequenceShow/hide protein sequence
MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIR
HEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGRSLTSKVRYPLS