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PI0027842 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027842
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPol polyprotein
Genome locationchr11:13605881..13606186
RNA-Seq ExpressionPI0027842
SyntenyPI0027842
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033219.1 Pol polyprotein [Cucumis melo var. makuwa]3.3e-4182.18Show/hide
Query:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK
        MSVTY+DWHE++PFALHGYRISVR S G+TPFSLVYGFEAVLP+EV+VP LR+ QE+ELD+AKW QVRYEQLNFIEE+RLT LC+G LYQKKIARAYNKK
Subjt:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK

Query:  V
        V
Subjt:  V

KAA0060778.1 Pol polyprotein [Cucumis melo var. makuwa]7.8e-3578.72Show/hide
Query:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIA
        MSVTY+DWHE++PFALHGYRISVR S G+TP SLVYGFEAVLP+EV+V  LR+ QEVELD+AKW QVRY+QLNFIEE+ LT LCKG LYQKKIA
Subjt:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIA

KAA0065292.1 RNA-directed DNA polymerase [Cucumis melo var. makuwa]2.1e-4081.19Show/hide
Query:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK
        MSVTY+DWHE++PFAL+GYRISVR S G+TPFSLVYGFEAVLP+EV+VP LR+ QE+ELD+AKW QVRYEQLNFIEE+RLT LC+G LYQKKIARAYNKK
Subjt:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK

Query:  V
        V
Subjt:  V

TYK15866.1 Pol polyprotein [Cucumis melo var. makuwa]3.5e-3575.25Show/hide
Query:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK
        M V Y+DWHE++PFAL+GYRISVR S GAT FSLVYGFE +LPIEV+V  L + QEVELD+ KW QVRYEQLNFIEE+RLT LC+G LYQKKIA AYNKK
Subjt:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK

Query:  V
        V
Subjt:  V

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]1.7e-3472.28Show/hide
Query:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK
        M+ TYKDWHEI+PFALHGYR SVR S GATPFSLVYG EAVLP+EV++P LR+  E +LD+A+W + RYEQLNFIEEKRLT L  G LYQK++ RAYNKK
Subjt:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7SVL0 Pol polyprotein1.6e-4182.18Show/hide
Query:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK
        MSVTY+DWHE++PFALHGYRISVR S G+TPFSLVYGFEAVLP+EV+VP LR+ QE+ELD+AKW QVRYEQLNFIEE+RLT LC+G LYQKKIARAYNKK
Subjt:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK

Query:  V
        V
Subjt:  V

A0A5A7TU03 Pol polyprotein1.9e-3478.65Show/hide
Query:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLY
        MSVTY+DWHE++PFALHGYRISVR S G+TPFSLVYGFEAVLP+EV+VP LR+ QE++LD+AKW QVRYEQLNFIEE+RLT LC+G LY
Subjt:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLY

A0A5A7UZT9 Pol polyprotein3.8e-3578.72Show/hide
Query:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIA
        MSVTY+DWHE++PFALHGYRISVR S G+TP SLVYGFEAVLP+EV+V  LR+ QEVELD+AKW QVRY+QLNFIEE+ LT LCKG LYQKKIA
Subjt:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIA

A0A5A7VAF2 RNA-directed DNA polymerase1.0e-4081.19Show/hide
Query:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK
        MSVTY+DWHE++PFAL+GYRISVR S G+TPFSLVYGFEAVLP+EV+VP LR+ QE+ELD+AKW QVRYEQLNFIEE+RLT LC+G LYQKKIARAYNKK
Subjt:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK

Query:  V
        V
Subjt:  V

A0A5D3CZI6 Pol polyprotein1.7e-3575.25Show/hide
Query:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK
        M V Y+DWHE++PFAL+GYRISVR S GAT FSLVYGFE +LPIEV+V  L + QEVELD+ KW QVRYEQLNFIEE+RLT LC+G LYQKKIA AYNKK
Subjt:  MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKK

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTCACTTATAAAGATTGGCATGAAATTGTTCCTTTCGCATTACATGGATATAGAATATCAGTTCGCATGTCAATAGGGGCAACCCCTTTTTCACTAGTGTATGG
TTTCGAAGCAGTTTTACCTATTGAAGTCGATGTGCCATTCCTTAGAATAAACCAAGAGGTAGAGCTAGATAAAGCAAAGTGGCCTCAAGTAAGGTACGAGCAGTTAAATT
TCATAGAAGAAAAGAGGTTGACTGTGCTATGTAAAGGACATTTGTACCAAAAGAAAATAGCACGAGCATACAACAAAAAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTCACTTATAAAGATTGGCATGAAATTGTTCCTTTCGCATTACATGGATATAGAATATCAGTTCGCATGTCAATAGGGGCAACCCCTTTTTCACTAGTGTATGG
TTTCGAAGCAGTTTTACCTATTGAAGTCGATGTGCCATTCCTTAGAATAAACCAAGAGGTAGAGCTAGATAAAGCAAAGTGGCCTCAAGTAAGGTACGAGCAGTTAAATT
TCATAGAAGAAAAGAGGTTGACTGTGCTATGTAAAGGACATTTGTACCAAAAGAAAATAGCACGAGCATACAACAAAAAAGTTTGA
Protein sequenceShow/hide protein sequence
MSVTYKDWHEIVPFALHGYRISVRMSIGATPFSLVYGFEAVLPIEVDVPFLRINQEVELDKAKWPQVRYEQLNFIEEKRLTVLCKGHLYQKKIARAYNKKV