; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0027846 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0027846
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 21
Genome locationchr05:23003132..23005703
RNA-Seq ExpressionPI0027846
SyntenyPI0027846
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0043078 - polar nucleus (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR021384 - Mediator complex, subunit Med21
IPR037212 - Mediator complex, subunit Med7/Med21-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK21740.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa]2.4e-6398.55Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
XP_004149640.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus]6.4e-6499.28Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
XP_008449895.1 PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]8.3e-6499.28Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
XP_038893979.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]1.3e-6195.65Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTEDSA IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
         VGQELQKQLQAAE+EL+QVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
XP_038902781.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]1.2e-6297.1Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN+IAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSA IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
         VGQELQKQLQAAEKEL+QVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
TrEMBL top hitse value%identityAlignment
A0A0A0KZ00 Mediator of RNA polymerase II transcription subunit 213.1e-6499.28Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
A0A1S3BN38 Mediator of RNA polymerase II transcription subunit 214.0e-6499.28Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
A0A5A7TEZ9 Mediator of RNA polymerase II transcription subunit 214.0e-6499.28Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
A0A5D3DEB7 Mediator of RNA polymerase II transcription subunit 211.2e-6398.55Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        VVGQELQKQLQAAE+ELVQVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
A0A6J1DHM9 Mediator of RNA polymerase II transcription subunit 214.2e-6195.65Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTEDSA IAEQPKLMSAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND

Query:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
         VGQELQKQL+AAEKEL QVQELFSQVADNCLNLKKAD
Subjt:  VVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
SwissProt top hitse value%identityAlignment
C0LU16 Mediator of RNA polymerase II transcription subunit 214.9e-5179.14Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN

Query:  DVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        D+VGQELQKQL+AAEKEL QVQELF Q ADNCLN+KK +
Subjt:  DVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
Arabidopsis top hitse value%identityAlignment
AT4G04780.1 mediator 213.5e-5279.14Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEN

Query:  DVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD
        D+VGQELQKQL+AAEKEL QVQELF Q ADNCLN+KK +
Subjt:  DVVGQELQKQLQAAEKELVQVQELFSQVADNCLNLKKAD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACGATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGACGCTCCTCCAGTTCGTTTATCCCCTAA
TTACCCCGAACCACCGTCTCAGGAGCCTACAGAAGATAGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAAGCAGTTTGATGCAT
TGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTA
CAAGCAGCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCCTGAACTTAAAGAAAGCAGATTGA
mRNA sequenceShow/hide mRNA sequence
AAAGGACAGAAAATAAGGAACCCTAATTCATCTGTTTCTTCTCCGTCTCACGTTCAACCGCCCAGCCCCTCCCTTGTCTCCGGTAGCATCTCGATGACAGTCCTTGGAGA
TTAACGCCGGATCGTACTCTCACTCACTCAGTTTCTGGAAGTGATTTGCTGATTAATCGGAGCGATATGTGTATTATTTGCGGAATCATCTTCTGAACAATTCTTCCTAG
GGATAAGGTTGAAGATGGATATAATTTCCCAATTGCAGGAACAAGTTAACACGATTGCTGCTTTAGCTTTCAACACATTTGGGACATTACAAAGAGACGCTCCTCCAGTT
CGTTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAAGATAGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCTAA
GCAGTTTGATGCATTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAAC
TTCAAAAGCAGCTACAAGCAGCAGAGAAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTGGCAGATAATTGCCTGAACTTAAAGAAAGCAGATTGAAAGAGTGGG
GGAATTTTTCTATGCTACCAATGTATGGAAATTTTCCGCATCTCCCCCGTTCCCCGTTCATTTCTGCCACACGACTCTTTGTTTTTATATTACCTATATGTAGAAATATA
CGTGAATCTACAGTTTATGGAAGAAAATTACTTTTATCAATTGTATTAATTTTTATTGACGTGTTTATATTTTCATCTTTCTACGTTTTCAAACAGTTTGGATATCAACA
TGAGGAGCGAATGAATATTTTTATTATATTATGAAAAACCATGAAAAAAATAAAAAGGCTAAATTATAAAAAATATTCCTTAA
Protein sequenceShow/hide protein sequence
MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQL
QAAEKELVQVQELFSQVADNCLNLKKAD